Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0233
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0226 - 10645036-10646001,10646313-10646828,10646905-106472...    29   1.6  
04_04_1084 + 30716247-30716345,30716762-30716937,30717755-307179...    29   2.8  
07_03_1572 - 27815760-27815819,27816374-27816494,27816580-278166...    27   6.5  

>05_03_0226 -
           10645036-10646001,10646313-10646828,10646905-10647210,
           10647382-10647984
          Length = 796

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +3

Query: 87  KFWKVEGGYPSRDSHYSALLAVRFCSNVVFKEQYVPIYRLPHFSCLVHRGVS 242
           KF+ V+ GYP+R  + +    + +     + E  +P  R  HF+ ++  G+S
Sbjct: 739 KFYLVDSGYPNRPGYLAPYKGITYHFQ-EYNESTLPRGRREHFTAILRVGMS 789


>04_04_1084 +
           30716247-30716345,30716762-30716937,30717755-30717970,
           30718070-30718212,30718682-30718884
          Length = 278

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +2

Query: 170 SLQRTICSYISIAALQ-LFSAQGSFKNLFAIILANSVIFL 286
           + Q  +   I +AA+  LFS +GS + LF +IL  SVI+L
Sbjct: 125 AFQLDLALIIKLAAVVFLFSQEGSKQRLFLLILFASVIYL 164


>07_03_1572 -
           27815760-27815819,27816374-27816494,27816580-27816620,
           27816737-27816797,27817549-27817635,27817728-27817855,
           27817935-27818050,27820671-27820789,27820892-27820983,
           27821082-27821169,27822523-27822902
          Length = 430

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 170 SLQRTICSYISIAALQLFSAQGSFKNLFAIILANSV 277
           S+ + + SY+ +A L+L S    F  L A+   NS+
Sbjct: 210 SIPKPLTSYVGVAVLELGSLYKLFMLLLAVFCTNSI 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,225,372
Number of Sequences: 37544
Number of extensions: 208082
Number of successful extensions: 441
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)