Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0233
         (505 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   4.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.3  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -2

Query: 192 EHIVL*RLH*NRI*QQVELNNVNLSKDSHLQPSKIFMYYTIVEFRIYTL 46
           E  +L  L   R   +  L++ N+SK S ++ + +F+    V  RI+ L
Sbjct: 234 EVYILQNLQKKRTRAEGRLSSDNMSKKSPVRKATLFLNMASVFMRIFNL 282


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 188 CSYISIAALQLFSAQGSF 241
           CSY   ++  +FSA GSF
Sbjct: 190 CSYNMDSSYVIFSAMGSF 207


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 87   KFWKVEGGYPSRDSHYSALLAVRFCSN 167
            K W ++G   SR  HYS    V F SN
Sbjct: 1021 KIWPMKGEEKSRLFHYS---VVPFVSN 1044


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,216
Number of Sequences: 438
Number of extensions: 3230
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)