Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0233
         (505 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    27   7.2  
At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR...    27   9.5  

>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -1

Query: 232 LCTKQLKCGNRYIGTYCSLKTTLEQNLTASRAE*CESLE 116
           LC   L CGN Y   +C        +L   R+E CE  +
Sbjct: 598 LCGNPLPCGNHYCSYFCHALDIRSSSLD-KRSESCEKCD 635


>At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1234

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 315 CIEN*NHFGNKNITEFANI 259
           C++N N FG++N+ EF N+
Sbjct: 633 CLKNMNLFGSENLKEFPNL 651


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,797,796
Number of Sequences: 28952
Number of extensions: 190554
Number of successful extensions: 387
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)