Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0231
         (540 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0734 - 26774471-26774652,26775008-26775137,26775447-267755...    28   4.1  
01_01_0237 - 1972699-1972796,1973618-1974334,1975387-1976191           28   5.5  
11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415     27   7.2  
01_03_0205 + 13777918-13778015,13778402-13778624,13779022-137791...    27   7.2  
01_01_0247 + 2023019-2023802,2023894-2023997                           27   9.6  

>11_06_0734 -
           26774471-26774652,26775008-26775137,26775447-26775596,
           26775685-26775918,26775990-26776161,26776285-26776506,
           26776604-26776770,26776880-26777018,26777342-26777693,
           26778175-26778370
          Length = 647

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 489 VVYDMRVSRLRFEGLGSPLSVGVWCVIRPF 400
           ++ D R    + EGL  PLS  + C+  PF
Sbjct: 599 ILRDWRFGHYKMEGLQDPLSCFIRCIFAPF 628


>01_01_0237 - 1972699-1972796,1973618-1974334,1975387-1976191
          Length = 539

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +1

Query: 127 KRPSEFDYRNFDVTCE-RNKGLK 192
           K P E  YR F VTC+ RN  LK
Sbjct: 305 KHPPECGYRTFQVTCDHRNASLK 327


>11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415
          Length = 1490

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = -3

Query: 448  AGVSIERWGLVRH*TFLPKPVRELDTAAGEAATAQGPVARWAHPSCRTSP 299
            A V +ERWG +R  T  P  V   D  A E+ T++G   R A    R SP
Sbjct: 1063 ASVMLERWGCLRGST--PANVVADDNTAAESRTSRGQPLRVA--LARASP 1108


>01_03_0205 +
           13777918-13778015,13778402-13778624,13779022-13779198,
           13779277-13779437,13779520-13780519,13780923-13781069,
           13781149-13781376,13781471-13781628,13781807-13782161
          Length = 848

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +1

Query: 85  THPL-VCASDL-LCSRKRPSEFDYRNFDVTCERN 180
           TH L +CA+++     ++P  FDY+NF +  + N
Sbjct: 651 THVLCLCANEIGQAESQQPDRFDYQNFSINDDEN 684


>01_01_0247 + 2023019-2023802,2023894-2023997
          Length = 295

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +1

Query: 127 KRPSEFDYRNFDVTCE-RNKGLK 192
           K P E  YR F VTC+ RN  LK
Sbjct: 60  KHPPECGYRAFQVTCDHRNASLK 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,939,857
Number of Sequences: 37544
Number of extensions: 255949
Number of successful extensions: 751
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)