Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0231
         (540 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54448| Best HMM Match : RVT_1 (HMM E-Value=0.096)                   29   3.2  
SB_41718| Best HMM Match : RVT_1 (HMM E-Value=1.4e-34)                 29   3.2  
SB_41510| Best HMM Match : Minor_tail_Z (HMM E-Value=3.5)              29   3.2  
SB_40055| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)                  29   3.2  
SB_32337| Best HMM Match : CaMBD (HMM E-Value=5.9)                     29   3.2  
SB_19821| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_14108| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)                  29   3.2  
SB_9519| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)                   29   3.2  
SB_3604| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_54746| Best HMM Match : RVT_1 (HMM E-Value=8.4e-11)                 29   3.2  
SB_6922| Best HMM Match : RVT_1 (HMM E-Value=1.4e-34)                  29   3.2  
SB_5327| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)                   29   3.2  
SB_12743| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_59680| Best HMM Match : Extensin_2 (HMM E-Value=1.2)                28   5.6  

>SB_54448| Best HMM Match : RVT_1 (HMM E-Value=0.096)
          Length = 343

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = -3

Query: 211 LSTFAYV*ALYFVHRSRQSYDNQIHSVVFLNTVN--H*HRLADVSSSRRANLNCVLSVRR 38
           L+T  Y    + ++R  +    Q H     N +N     R+ +     RANL  V++  R
Sbjct: 272 LTTLLYGCETWTIYRRHEKLLQQFHLRCLRNILNIRWQDRITNTEVLERANLPSVITTMR 331

Query: 37  SAETRASKH 11
            A+TR + H
Sbjct: 332 KAQTRWAGH 340


>SB_41718| Best HMM Match : RVT_1 (HMM E-Value=1.4e-34)
          Length = 470

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = -3

Query: 211 LSTFAYV*ALYFVHRSRQSYDNQIHSVVFLNTVN--H*HRLADVSSSRRANLNCVLSVRR 38
           L+T  Y    + ++R  +    Q H     N +N     R+ +     RANL  V++  R
Sbjct: 399 LTTLLYGCETWTIYRRHEKLLQQFHLRCLRNILNIRWQDRITNTEVLERANLPSVITTMR 458

Query: 37  SAETRASKH 11
            A+TR + H
Sbjct: 459 KAQTRWAGH 467


>SB_41510| Best HMM Match : Minor_tail_Z (HMM E-Value=3.5)
          Length = 208

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = -3

Query: 211 LSTFAYV*ALYFVHRSRQSYDNQIHSVVFLNTVN--H*HRLADVSSSRRANLNCVLSVRR 38
           L+T  Y    + ++R  +    Q H     N +N     R+ +     RANL  V++  R
Sbjct: 83  LTTLLYGCETWTIYRRHEKLLQQFHLRCLRNILNIRWQDRITNTEVLERANLPSVITTMR 142

Query: 37  SAETRASKH 11
            A+TR + H
Sbjct: 143 KAQTRWAGH 151


>SB_40055| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
          Length = 303

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = -3

Query: 211 LSTFAYV*ALYFVHRSRQSYDNQIHSVVFLNTVN--H*HRLADVSSSRRANLNCVLSVRR 38
           L+T  Y    + ++R  +    Q H     N +N     R+ +     RANL  V++  R
Sbjct: 109 LTTLLYGCETWTIYRRHEKLLQQFHLRCLRNILNIRWQDRITNTEVLERANLPSVITTMR 168

Query: 37  SAETRASKH 11
            A+TR + H
Sbjct: 169 KAQTRWAGH 177


>SB_32337| Best HMM Match : CaMBD (HMM E-Value=5.9)
          Length = 289

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = -3

Query: 211 LSTFAYV*ALYFVHRSRQSYDNQIHSVVFLNTVN--H*HRLADVSSSRRANLNCVLSVRR 38
           L+T  Y    + ++R  +    Q H     N +N     R+ +     RANL  V++  R
Sbjct: 204 LTTLLYGCETWTIYRRHEKLLQQFHLRCLRNILNIRWQDRITNTEVLERANLPSVITTMR 263

Query: 37  SAETRASKH 11
            A+TR + H
Sbjct: 264 KAQTRWAGH 272


>SB_19821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = -3

Query: 211 LSTFAYV*ALYFVHRSRQSYDNQIHSVVFLNTVN--H*HRLADVSSSRRANLNCVLSVRR 38
           L+T  Y    + ++R  +    Q H     N +N     R+ +     RANL  V++  R
Sbjct: 334 LTTLLYGCETWTIYRRHEKLLQQFHLRCLRNILNIRWQDRITNTEVLERANLPSVITTMR 393

Query: 37  SAETRASKH 11
            A+TR + H
Sbjct: 394 KAQTRWAGH 402


>SB_14108| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
          Length = 404

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = -3

Query: 211 LSTFAYV*ALYFVHRSRQSYDNQIHSVVFLNTVN--H*HRLADVSSSRRANLNCVLSVRR 38
           L+T  Y    + ++R  +    Q H     N +N     R+ +     RANL  V++  R
Sbjct: 210 LTTLLYGCETWTIYRRHEKLLQQFHLRCLRNILNIRWQDRITNTEVLERANLPSVITTMR 269

Query: 37  SAETRASKH 11
            A+TR + H
Sbjct: 270 KAQTRWAGH 278


>SB_9519| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
          Length = 299

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = -3

Query: 211 LSTFAYV*ALYFVHRSRQSYDNQIHSVVFLNTVN--H*HRLADVSSSRRANLNCVLSVRR 38
           L+T  Y    + ++R  +    Q H     N +N     R+ +     RANL  V++  R
Sbjct: 105 LTTLLYGCETWTIYRRHEKLLQQFHLRCLRNILNIRWQDRITNTEVLERANLPSVITTMR 164

Query: 37  SAETRASKH 11
            A+TR + H
Sbjct: 165 KAQTRWAGH 173


>SB_3604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1319

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = -3

Query: 211  LSTFAYV*ALYFVHRSRQSYDNQIHSVVFLNTVN--H*HRLADVSSSRRANLNCVLSVRR 38
            L+T  Y    + ++R  +    Q H     N +N     R+ +     RANL  V++  R
Sbjct: 1125 LTTLLYGCETWTIYRRHEKLLQQFHLRCLRNILNIRWQDRITNTEVLERANLPSVITTMR 1184

Query: 37   SAETRASKH 11
             A+TR + H
Sbjct: 1185 KAQTRWAGH 1193


>SB_54746| Best HMM Match : RVT_1 (HMM E-Value=8.4e-11)
          Length = 959

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = -3

Query: 211  LSTFAYV*ALYFVHRSRQSYDNQIHSVVFLNTVN--H*HRLADVSSSRRANLNCVLSVRR 38
            L+T  Y    + ++R  +    Q H     N +N     R+ +     RANL  V++  R
Sbjct: 829  LTTLLYGWETWTIYRRHEKLLQQFHLRCLRNILNIRWQDRITNTEVLERANLPSVITTMR 888

Query: 37   SAETRASKH 11
             A+TR + H
Sbjct: 889  KAQTRWAGH 897


>SB_6922| Best HMM Match : RVT_1 (HMM E-Value=1.4e-34)
          Length = 425

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = -3

Query: 211 LSTFAYV*ALYFVHRSRQSYDNQIHSVVFLNTVN--H*HRLADVSSSRRANLNCVLSVRR 38
           L+T  Y    + ++R  +    Q H     N +N     R+ +     RANL  V++  R
Sbjct: 340 LTTLLYGCETWTIYRRHEKLLQQFHLRCLRNILNIRWQDRITNTEVLERANLPSVITTMR 399

Query: 37  SAETRASKH 11
            A+TR + H
Sbjct: 400 KAQTRWAGH 408


>SB_5327| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
          Length = 328

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = -3

Query: 211 LSTFAYV*ALYFVHRSRQSYDNQIHSVVFLNTVN--H*HRLADVSSSRRANLNCVLSVRR 38
           L+T  Y    + ++R  +    Q H     N +N     R+ +     RANL  V++  R
Sbjct: 134 LTTLLYGCETWTIYRRHEKLLQQFHLRCLRNILNIRWQDRITNTEVLERANLPSVITTMR 193

Query: 37  SAETRASKH 11
            A+TR + H
Sbjct: 194 KAQTRWAGH 202


>SB_12743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 922

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -3

Query: 181 YFVHRSRQSYDNQIHSVVFLNTVN-H*HRLADVSSSRRANLNCVLSVRRSAETRASKHRP 5
           YF  R R SY    HSV F + V  + H L +    +   +NC +SV+R  E       P
Sbjct: 81  YFQGRGRHSYA-YTHSVQFGHHVYLNLHTLKNFIKHKSTFVNCYVSVQRYGELLRKLWNP 139

Query: 4   R 2
           R
Sbjct: 140 R 140


>SB_59680| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
          Length = 412

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 418 PDPNAQWRPQPFKS*PRYTHIVYNVPTAPPLSLTNAQ 528
           P P   ++P PF       H++Y  PTAPP ++  A+
Sbjct: 179 PPPLNPYQPPPFPP----PHLMYPQPTAPPAAIPRAK 211


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,935,595
Number of Sequences: 59808
Number of extensions: 284360
Number of successful extensions: 791
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)