Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0231
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z81523-5|CAB04240.2|  298|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AL031635-7|CAB54384.2|  487|Caenorhabditis elegans Hypothetical ...    28   4.9  

>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
            K10D2.3 protein.
          Length = 1425

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 100  CASDLLCSRKRPSEFDYRNFDVTCERNKGLKRMRK 204
            CA  L+      S FD+RNF V C R   L +M K
Sbjct: 1246 CAQLLIGYFDYYSRFDFRNFVVQCRREMILSKMEK 1280


>Z81523-5|CAB04240.2|  298|Caenorhabditis elegans Hypothetical
           protein F32H2.4 protein.
          Length = 298

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 237 DYEVTVADVPDGVRVQCTRHHGEVRHEGW 323
           D+ + +A VPDG R    +H GE     W
Sbjct: 239 DHSIDIAYVPDGSRCHEIKHTGETYSVAW 267


>AL031635-7|CAB54384.2|  487|Caenorhabditis elegans Hypothetical
           protein Y47D3B.11 protein.
          Length = 487

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 20/64 (31%), Positives = 27/64 (42%)
 Frame = +1

Query: 22  RASPPTDGQTTHS*GSRAVRKTHPLVCASDLLCSRKRPSEFDYRNFDVTCERNKGLKRMR 201
           R SP  D  +  S  SR+ R T P      L+ S  RPS     +   T  R +   R R
Sbjct: 388 RTSPSEDLPSAPS--SRSTRLTRPYRTTHHLIPSSTRPSSHQRPSLQPTAPRTRSCPRRR 445

Query: 202 K*RA 213
           + R+
Sbjct: 446 QLRS 449


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,452,991
Number of Sequences: 27780
Number of extensions: 208359
Number of successful extensions: 578
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)