Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0230
         (507 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   3.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.3  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   7.3  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   7.3  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 13  ANRTYLFEFPANYKSPSAPVCVKA 84
           A RTYLF+   N      P  V A
Sbjct: 545 AGRTYLFDLDYNESEEQCPYTVDA 568


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 475 LSPHEQVVNELGRVLAFFSRSIEE 404
           +  H Q+++ L  VLA   R ++E
Sbjct: 362 IDQHSQLIDTLENVLAIVDRLMDE 385


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 226 SCGRS*GSNESEDSKENSPHLNFSYNHRFFDDTQKNMR 113
           S GRS    E E SKE     + +YN++ +++   + +
Sbjct: 285 SKGRSRDRTERERSKETKIISSNNYNYKNYNNNYNSKK 322


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 226 SCGRS*GSNESEDSKENSPHLNFSYNHRFFDDTQKNMR 113
           S GRS    E E SKE     + +YN++ +++   + +
Sbjct: 296 SKGRSRDRTERERSKETKIISSNNYNYKNYNNNYNSKK 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,677
Number of Sequences: 438
Number of extensions: 2185
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)