Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0229
         (446 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    26   2.3  
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac...    25   7.0  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   7.0  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    24   9.3  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    24   9.3  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    24   9.3  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    24   9.3  

>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +2

Query: 137 SERRANALQNELEESRTLLEQADRARRQAE---QELSDAHE 250
           SE+R N L+ +L ++ TLL        + +     +SD+HE
Sbjct: 136 SEKRVNQLKKQLVDAETLLSSTQHQLTELKDVMHSMSDSHE 176


>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 143 RRANALQNELEESRTLLEQADRARRQAEQE 232
           RR + +    E  R L E+ + ARRQ EQ+
Sbjct: 163 RRIDLVLARKEAKRKLKEKEEEARRQKEQQ 192


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 128 LGISERRANALQNELEESRTLLEQADRARRQAEQELSDAHE 250
           L I++ R   L N+L+E + L  + D    +A   +   HE
Sbjct: 862 LTITKERVLQLTNDLQEEQALAHEKDILVERANSRVEVVHE 902


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = +3

Query: 159 FRTN--WKSPAHSWSRPTAPAA 218
           FR N  W S A++WS+ TA AA
Sbjct: 368 FRDNLSWLSKANNWSKFTATAA 389


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 129 SASRSVAPMLFRTNWKSPAHSWS 197
           +A   +AP+L R  WK    +WS
Sbjct: 484 TAKSRLAPILLRLKWKKHPLAWS 506


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 117 PANSSASRSVAPMLFRTNWKSPAHSWSRPTAP 212
           P N+   R+V P+L R++  +P+     P AP
Sbjct: 539 PGNTPGHRNVPPILKRSSIGTPSQQAYFPDAP 570


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 51  LPGTNQGICKPLSRRSSAPV 110
           L G+  GIC+PLS R+   V
Sbjct: 350 LDGSLYGICRPLSSRAQTSV 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.125    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 981,715
Number of Sequences: 5004
Number of extensions: 12145
Number of successful extensions: 64
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)