Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0229
(446 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0276 + 26878732-26879574,26879920-26880387,26880800-268810... 28 3.0
07_03_1293 - 25563431-25563545,25564078-25564196,25564300-255644... 27 5.2
06_01_0919 - 7090494-7091219,7091630-7091763,7091860-7091927,709... 27 5.2
06_01_0839 + 6365962-6366798 27 6.9
08_02_1275 - 25792148-25792227,25792457-25792488,25792590-257926... 27 9.1
07_01_0639 - 4785446-4786186,4786429-4786656,4786727-4786872,478... 27 9.1
04_04_0039 + 22316171-22316273,22317124-22317824,22317924-223180... 27 9.1
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 27 9.1
02_05_1256 - 35281926-35282635,35282711-35283112,35283508-35283814 27 9.1
>05_06_0276 +
26878732-26879574,26879920-26880387,26880800-26881021,
26881153-26881278,26881309-26881573,26881719-26881936
Length = 713
Score = 28.3 bits (60), Expect = 3.0
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = +3
Query: 27 RGPEEHQTLPGTNQGICKPLSRRSSAPVTMPANSSASRSVAPMLFRTNWKSPAHSWSRPT 206
R P + T+ + RR+ +P P S RS + +SP SWSR
Sbjct: 42 RSPRRRSPVKSTSSHRERSPVRRNGSPRRSPVRS-IGRSPQRDRVKEQVRSPKQSWSRSP 100
Query: 207 APAAR 221
+PA +
Sbjct: 101 SPARK 105
>07_03_1293 -
25563431-25563545,25564078-25564196,25564300-25564467,
25564565-25564627,25564709-25564816,25565125-25565237,
25565313-25565609,25565724-25565802,25566116-25566224,
25566324-25566365,25567023-25567153,25568100-25568648
Length = 630
Score = 27.5 bits (58), Expect = 5.2
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +3
Query: 69 GICKPLSRRSSAPVTMPANSSASRSVAPMLFRTNWKSPAHSWSRPT-APA 215
G C P R P T P S A+ P W SP +S P+ +PA
Sbjct: 16 GACSPPRERPQPPATPPRGSGAA---TPAWKTKPWASPFFGFSTPSPSPA 62
>06_01_0919 -
7090494-7091219,7091630-7091763,7091860-7091927,
7092471-7092515,7092620-7092639,7092798-7092860,
7092946-7093115,7093216-7093252
Length = 420
Score = 27.5 bits (58), Expect = 5.2
Identities = 18/74 (24%), Positives = 29/74 (39%)
Frame = +2
Query: 128 LGISERRANALQNELEESRTLLEQADRARRQAEQELSDAHEXXXXXXXXXXXXXXXXXXX 307
+ + + R + +++ + + LE A RAR AEQEL
Sbjct: 16 MSVLKLRLDGVRSAYDAAAAELETAKRAREDAEQELGGNQVQVAIAVVSIHGLEATISHL 75
Query: 308 XXELQTLHSDLDEL 349
E+ + SDLD L
Sbjct: 76 QEEISQVRSDLDAL 89
>06_01_0839 + 6365962-6366798
Length = 278
Score = 27.1 bits (57), Expect = 6.9
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 143 RRANALQNELEESRTLLEQADRARRQAEQELSDAHE 250
R N L +E+E ++ + ++ + +QE++D HE
Sbjct: 160 RDINLLDSEIELHEAIIAEREQGILEVQQEIADIHE 195
>08_02_1275 -
25792148-25792227,25792457-25792488,25792590-25792651,
25792721-25792801,25793086-25793241,25793292-25793348,
25793349-25793510,25793586-25793648,25793742-25793804,
25793895-25793948,25794334-25794390,25794479-25794547,
25795053-25795166,25795245-25795316,25795406-25795527,
25796416-25796617
Length = 481
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 146 RANALQNELEESRTLLEQADRARRQAEQELSDAH 247
+ +ALQ +E + L+ +RA + AE+EL H
Sbjct: 167 KIDALQKTNDEQKRKLQSTERALKVAEEELMRLH 200
>07_01_0639 -
4785446-4786186,4786429-4786656,4786727-4786872,
4786986-4787186,4787256-4787432,4787741-4788359
Length = 703
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 173 EESRTLLEQADRARRQAEQELSDAH 247
+ SR + +AD ARRQAE +L+ H
Sbjct: 502 DSSRLAVARADSARRQAELDLTLVH 526
>04_04_0039 +
22316171-22316273,22317124-22317824,22317924-22318010,
22318361-22318420,22318971-22319912,22320678-22320723,
22320889-22321010
Length = 686
Score = 26.6 bits (56), Expect = 9.1
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 27 RGPEEHQTLPGTNQGICKPLSRRSSAPVTMPANSSASRSVAPMLFRT 167
R P +H+ + T G + LSR + V A S S +P+L R+
Sbjct: 355 RAPVKHELVKPTQSGSFQVLSREQNGTVN-TAKESTSNPASPVLGRS 400
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 26.6 bits (56), Expect = 9.1
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 72 ICKPLSRRSSAPVTMPANSSASRSVAPMLFRTNWKSPAHSWS-RPTAP 212
+ P + ++ PVT+PA + A V P + +PA +S P P
Sbjct: 247 VTNPTTTPATNPVTVPATNPAMNPVTPGIVTVPSTNPATGYSNNPNLP 294
>02_05_1256 - 35281926-35282635,35282711-35283112,35283508-35283814
Length = 472
Score = 26.6 bits (56), Expect = 9.1
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +3
Query: 123 NSSASRSVAPMLFRTNWK--SPAHSWSRP 203
+SS+S P L R W SPA +WSRP
Sbjct: 11 SSSSSGRRTPELERERWAPWSPAPTWSRP 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.125 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,188,281
Number of Sequences: 37544
Number of extensions: 99131
Number of successful extensions: 419
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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