Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0229
         (446 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         26   0.70 
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   4.9  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            22   8.6  

>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 25.8 bits (54), Expect = 0.70
 Identities = 18/55 (32%), Positives = 22/55 (40%)
 Frame = +3

Query: 48  TLPGTNQGICKPLSRRSSAPVTMPANSSASRSVAPMLFRTNWKSPAHSWSRPTAP 212
           T P      C PLS  SSA  +  A  S     +P    +N + PA S   P  P
Sbjct: 229 TAPAIPVSSCSPLSTASSASCSSSAAGSLC-PTSPPASVSNGEQPASSVGDPANP 282


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 140 ERRANALQNELEESRTLLEQADRARRQAEQEL 235
           E     L+ ELE SRT+L +  +   + + +L
Sbjct: 778 ETEETTLREELEHSRTILAKLQKGIEEEQAKL 809


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 146  RANALQNELEESRTLLE 196
            R  AL +ELEESR +L+
Sbjct: 3256 RIAALSDELEESRHILQ 3272


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.315    0.125    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 254,545
Number of Sequences: 2352
Number of extensions: 3145
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 37843779
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)