Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0229
         (446 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25070.1 68418.m02971 expressed protein                             27   5.8  
At3g08670.1 68416.m01007 expressed protein                             27   7.6  
At1g80610.1 68414.m09459 expressed protein                             27   7.6  

>At5g25070.1 68418.m02971 expressed protein
          Length = 736

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 137 SERRANALQNELEESRTLLEQADRARRQAEQ 229
           +ER A    ++LEE+  LLE+A  A  +AE+
Sbjct: 660 AERSAALELSDLEEANLLLEEAQEAESEAEK 690


>At3g08670.1 68416.m01007 expressed protein 
          Length = 567

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 81  PLSRRSSA--PVTMPANSSASRSVAPMLFRTNWKSPAHSWSRPT 206
           P SR SS+  P T    SSASRS  P   R    S +   +RP+
Sbjct: 196 PSSRSSSSARPSTPTRTSSASRSSTPSRIRPGSSSSSMDKARPS 239


>At1g80610.1 68414.m09459 expressed protein
          Length = 211

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 143 RRANALQNELEESRTLLEQADRARRQAEQEL 235
           + +N L+NEL   R LLEQ  RAR  A +++
Sbjct: 143 KESNGLKNELANMRDLLEQ-QRARNTALKKM 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.125    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,366,713
Number of Sequences: 28952
Number of extensions: 68838
Number of successful extensions: 258
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)