Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0228
         (532 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5DHN4 Cluster: Putative uncharacterized protein; n=1; ...    35   1.0  
UniRef50_O96204 Cluster: Putative uncharacterized protein PFB055...    32   9.5  

>UniRef50_A5DHN4 Cluster: Putative uncharacterized protein; n=1;
           Pichia guilliermondii|Rep: Putative uncharacterized
           protein - Pichia guilliermondii (Yeast) (Candida
           guilliermondii)
          Length = 251

 Score = 35.1 bits (77), Expect = 1.0
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +1

Query: 352 FFYDPYHLSRKRFTTIIWFVFHVHIYMFPDTSVLVKSICLFIISQNFLKINSS 510
           FF+ P   SRK   ++    FH  IY   DTS+ +  I L ++++N  K+ S+
Sbjct: 136 FFFFPRLCSRKGSKSLTNLCFHRSIYFLVDTSMPISFISLELVAKNLSKLPSN 188


>UniRef50_O96204 Cluster: Putative uncharacterized protein PFB0555c;
            n=4; Plasmodium|Rep: Putative uncharacterized protein
            PFB0555c - Plasmodium falciparum (isolate 3D7)
          Length = 4091

 Score = 31.9 bits (69), Expect = 9.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 257  YSHFAVMYFNIIHNRPMFLQLFF*IIVIHSHGYK 156
            Y   ++ Y N ++N P+FL LF   + IH H +K
Sbjct: 3066 YLKKSIKYNNHLYNMPIFLSLFLRCVTIHLHYFK 3099


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 460,891,659
Number of Sequences: 1657284
Number of extensions: 8432938
Number of successful extensions: 15212
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15212
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33873797511
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)