Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0228
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    27   1.7  
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz...    27   1.7  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    26   3.0  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    25   5.3  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   5.3  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    25   7.0  
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch...    25   7.0  
SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces pomb...    25   9.3  

>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 317 SKAESKCSNESRFFTILIIYRENASPQLFGSYFTFIYT 430
           S+AE  C    +    L  YREN SP L+GS  + ++T
Sbjct: 139 SEAEKSCDFYGQ---PLHFYRENTSPCLYGSSLSNVFT 173


>SPBC1A4.06c |||mitochondrial matrix protein import
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 226 MLKYITAKWLYRHSYS 273
           +L+Y T +W+ RHSYS
Sbjct: 13  ILRYSTKRWMNRHSYS 28


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 312 VTQKQNRNAVMNHVFLRSLSFIEKTLHHNYLVRISR 419
           + Q QNR  V N      + F+E +L  N+L+ ++R
Sbjct: 776 IAQGQNRGIVQNFGVQDEVLFLEISLTENWLIFVTR 811


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 312 VTQKQNRNAVMNHVFLRSLSFIEKTLHHNYLVRISR 419
           + Q QNR  V N      + F++ +L  N+L+ I+R
Sbjct: 864 IAQGQNRGIVQNFGVQDEVLFLQISLTENWLIFITR 899


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 358 YDPYHLSRKRFTTIIWFV-FHVHIYMF 435
           Y PYH + K FT  IW + F +  +M+
Sbjct: 696 YTPYHPNEKLFTAGIWTIHFGLDNFMY 722


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -1

Query: 175 YIVMDTKLFYHSVDA 131
           Y++ D+ +FYH +DA
Sbjct: 84  YLIPDSNIFYHCIDA 98


>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 309 YVTQKQNRNAVMNHVFLRSLSFIEKTLHH-NYLVRISRSYIHVP*HFCFSEINMSIHYFT 485
           Y+T+        N VFL  L ++++ +HH ++ V I+   IH    F  +    +  +F+
Sbjct: 85  YLTRILKYCPATNDVFLSVLIYLDRIVHHFHFTVFINSFNIH---RFLIAGFTAASKFFS 141

Query: 486 KLF 494
            +F
Sbjct: 142 DVF 144


>SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 104 FYPSFNPITGIYAMVKQLCIHDYVLL*SKKIIAKTLDDYVL 226
           F P    +TG Y  +K +C    V   + K I    DDY++
Sbjct: 180 FNPKIVGLTGSYEEIKDICKKFRVYFSTPKNIDPKKDDYLV 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,075,095
Number of Sequences: 5004
Number of extensions: 41150
Number of successful extensions: 94
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)