Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0228
         (532 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10896| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.77 
SB_52270| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_26556| Best HMM Match : DUF1378 (HMM E-Value=9.5)                   30   1.4  
SB_10971| Best HMM Match : DUF1378 (HMM E-Value=3.4)                   30   1.4  
SB_2398| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.8  
SB_34427| Best HMM Match : DUF1378 (HMM E-Value=6.2)                   29   1.8  

>SB_10896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 273 LKRFSI*RVKIFYVTQKQNRNAVMNHVFLRSLSFIEKTLHHNYL 404
           LK  ++ RV + Y  Q  + N +M+HV  R LS   +  H N+L
Sbjct: 296 LKMLTLIRVPLSYRYQLVDVNTIMSHVHTRYLSRFTQKSHDNFL 339


>SB_52270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 412 FHVHIYMFPDTSVLVKSI--CLFIISQNFLKINSSRGIKK 525
           F   I M  DT ++ +SI  CLF++  NFLKI  +R  +K
Sbjct: 33  FAYDIEMRMDTKLIHESIVCCLFLVRGNFLKIERNRRHRK 72


>SB_26556| Best HMM Match : DUF1378 (HMM E-Value=9.5)
          Length = 116

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 412 FHVHIYMFPDTSVLVKSI--CLFIISQNFLKINSSRGIKK 525
           F   I M  DT ++ +SI  CLF++  NFLKI  +R  +K
Sbjct: 53  FAYDIEMRMDTKLIHESIVCCLFLVRGNFLKIERNRRHRK 92


>SB_10971| Best HMM Match : DUF1378 (HMM E-Value=3.4)
          Length = 228

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 412 FHVHIYMFPDTSVLVKSI--CLFIISQNFLKINSSRGIKK 525
           F   I M  DT ++ +SI  CLF++  NFLKI  +R  +K
Sbjct: 53  FAYDIEMRMDTKLIHESIVCCLFLVRGNFLKIERNRRHRK 92



 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 412 FHVHIYMFPDTSVLVKSI--CLFIISQNFLKINSSRGIKK 525
           F   I M  DT ++ +SI  CLF++  NFLKI   R  +K
Sbjct: 165 FAYDIEMRMDTKLIHESIVCCLFLVRGNFLKIERIRRHRK 204


>SB_2398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 412 FHVHIYMFPDTSVLVKSI--CLFIISQNFLKINSSRGIKK 525
           F   I M  DT ++ +SI  CLF++  NFLKI  +R  +K
Sbjct: 53  FAYDIEMRLDTKLIHQSIVCCLFLVRGNFLKIERNRRHRK 92


>SB_34427| Best HMM Match : DUF1378 (HMM E-Value=6.2)
          Length = 116

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 412 FHVHIYMFPDTSVLVKSI--CLFIISQNFLKINSSRGIKK 525
           F   I M  DT ++ +SI  CLF++  NFLKI  +R  +K
Sbjct: 53  FAYDIEMRMDTKLVHESIVCCLFLVRGNFLKIERNRRHRK 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,247,248
Number of Sequences: 59808
Number of extensions: 260195
Number of successful extensions: 442
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)