Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0227
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    27   0.93 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   1.2  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    27   1.6  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    26   2.2  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   5.0  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   6.6  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    24   8.7  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    24   8.7  

>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 283 TGAPKCLYQLESGPRNSHSSYKHMRRLRPFRD 188
           T A  C++    G    H  Y+HM R   F+D
Sbjct: 211 TSALNCMHGFVYGKTEFHMRYRHMNRFVAFKD 242


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 271  LEHLFKHSESTCDDVIKLGGLDAVLFECRKNDVETFET 384
            LE  + +   TC D  + GGL+++ F+   ++++ F T
Sbjct: 3821 LEQSYLNFFETCSDSNERGGLESLFFKTHASNIQNFCT 3858


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 115 LQFSSAKLLEQCLTTENRAHVVENGLEKVVNVACVCTKNAN 237
           L+F   K   + +  +N A V+ NG++KV+      +++AN
Sbjct: 341 LKFLRNKFTMKFVNKKNWATVLSNGIKKVIKTITASSRHAN 381


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 23/95 (24%), Positives = 37/95 (38%)
 Frame = +1

Query: 10  GTRGHELGYSLCNTLRTSGGLDILMANCLESNNPELQFSSAKLLEQCLTTENRAHVVENG 189
           G     L Y+L  T   S     L+ +CL  +  + +  S    E   T    A + E+ 
Sbjct: 219 GQATRHLTYALSRTCSQSSNTTSLLESCLTDDTDDFELMSDH--EDTFTMGKVADLPESS 276

Query: 190 LEKVVNVACVCTKNANSVDHSRVGTGILEHLFKHS 294
           +E V + A +   N+   D        L+ LF+ S
Sbjct: 277 VELVEDAASIQRPNS---DFGACNDNSLDDLFQAS 308


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 73  DILMANCLESNNPELQFSSAKLLEQCLT 156
           D L+ NC++++N + Q  S K    C+T
Sbjct: 719 DRLIRNCIKAHNKQQQRRSIKSFFSCIT 746


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 95  WSLTIRNCSSHLPNYLSNVSR 157
           W L I NC S LP+ L   S+
Sbjct: 435 WDLAIDNCLSQLPDMLDAESK 455


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 243  HGIRILRTNTCDVYDLFETILYD 175
            H +R+LRTN   V  + E  +YD
Sbjct: 2204 HVMRVLRTNKESVMAVLEAFVYD 2226


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 380 SKVSTSFFLHSNSTASRPPNLMTSSQVLS 294
           S +S     +SN+T  + PN+++S QV++
Sbjct: 253 SSISKGKKNNSNNTTQKGPNIISSPQVIN 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.133    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,887,463
Number of Sequences: 5004
Number of extensions: 37437
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)