Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0227
         (428 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0917 + 9033451-9036136,9036373-9036722                           29   1.2  
10_01_0043 + 570340-571683                                             27   4.9  
06_03_1304 - 29187930-29188273,29188926-29189039,29189453-291897...    27   6.4  
06_03_0163 - 17380601-17380710,17380796-17380856,17381076-173811...    27   8.5  
02_03_0027 + 14065720-14066328                                         27   8.5  
01_06_0507 - 29893563-29894470,29895227-29895419                       27   8.5  
01_05_0297 - 20578031-20578080,20578162-20578236,20578317-205784...    27   8.5  

>08_01_0917 + 9033451-9036136,9036373-9036722
          Length = 1011

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +1

Query: 169  AHVVENGLEKVVNVACVCTKNANSVDHSRVGTGILEHLFKHSESTCDDVIKLGGLDAVLF 348
            AHV + GL K++N+A  C ++++ V    +G    E+      S   D+   G L   +F
Sbjct: 861  AHVTDFGLAKIINIAEPCKESSSFVIKGTIGYVAPEYGSGSPVSMDGDIYSYGVLLLEMF 920

Query: 349  ECRK 360
              R+
Sbjct: 921  TGRR 924


>10_01_0043 + 570340-571683
          Length = 447

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +1

Query: 238 SVDHS----RVGTGILEHLFKHSESTCDDVIKLGGLDAVLFECRKNDV 369
           S+DH+     V + +++H+      T DDV     + AVL++CR   V
Sbjct: 227 SIDHTFNNITVPSSLIDHIRFRGRRTNDDVTVFEAVAAVLWQCRTRAV 274


>06_03_1304 -
           29187930-29188273,29188926-29189039,29189453-29189722,
           29190098-29190234,29190483-29191159
          Length = 513

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 245 TTLELVQAFWSTCSSTARAPAMTSSN 322
           +T  L+QAFW++C     A A+ SSN
Sbjct: 386 STNYLLQAFWTSCLGVDPACAVVSSN 411


>06_03_0163 -
           17380601-17380710,17380796-17380856,17381076-17381150,
           17381538-17381600,17381679-17381755,17382432-17382515,
           17382610-17382654,17382729-17382789,17383658-17384053,
           17384220-17384289,17387010-17387083,17387202-17387246,
           17387342-17387391,17387846-17387947,17388587-17388620,
           17388681-17388758,17388915-17388965,17389082-17389085,
           17389182-17389256,17389530-17389624
          Length = 549

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 29  LAIHFAIHCGLRVA*TF*WRIVWSLTIRNCSSHLPNYLSNVSR 157
           + ++++I  GLRV   F  R+  +  +  C S  P+YL+++ R
Sbjct: 56  IGLNYSIVAGLRVNTKFDARLCIAHFLTECLSSRPSYLASLGR 98


>02_03_0027 + 14065720-14066328
          Length = 202

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 306 R*RHQIRRSGCGAVRMQKKRRGNL*DTAR 392
           R R + R  G GA  M ++RRG + DTAR
Sbjct: 127 RDRRRRRWRGKGATTMVRRRRGAMGDTAR 155


>01_06_0507 - 29893563-29894470,29895227-29895419
          Length = 366

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 259 QLESGPRNSHSSYKHMRRLRPFRDHSLRRA 170
           QL S    S +  +H RRLRPF    +R A
Sbjct: 96  QLRSWATRSGACERHQRRLRPFARRPVRMA 125


>01_05_0297 -
           20578031-20578080,20578162-20578236,20578317-20578416,
           20578476-20578535,20578833-20578907,20578989-20579069,
           20579596-20579665,20579769-20579833,20580008-20580116,
           20580812-20580876,20580964-20581023,20582008-20582134,
           20582215-20582315,20583209-20583316,20583429-20583464,
           20583569-20583714,20585555-20585564
          Length = 445

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = +1

Query: 139 LEQCLTTENRAHVVENG-----LEKVVNVACVCTKNANSVDHSRVGTGILEHLFKHSES 300
           L Q LT+E R H  E+G      E V ++ C  + + N + H  +  G+   L K S S
Sbjct: 209 LSQTLTSETRVHCAESGEESLERESVYSLKCHISHDVNHL-HEGLKHGLKSELEKASPS 266


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.133    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,929,447
Number of Sequences: 37544
Number of extensions: 262623
Number of successful extensions: 822
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)