Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0227
(428 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2392| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.31
SB_57739| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.41
SB_31372| Best HMM Match : Arm (HMM E-Value=0) 30 0.71
SB_33425| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.71
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042) 29 2.2
SB_35866| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34) 29 2.2
SB_44410| Best HMM Match : RCSD (HMM E-Value=7.2) 28 2.9
SB_9603| Best HMM Match : Extensin_2 (HMM E-Value=0.0058) 28 2.9
SB_38786| Best HMM Match : HLH (HMM E-Value=1e-13) 28 3.8
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13) 27 5.0
SB_22289| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 27 5.0
SB_45045| Best HMM Match : Kinesin (HMM E-Value=0) 27 6.6
SB_38268| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_12340| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_52733| Best HMM Match : DUF948 (HMM E-Value=0.37) 27 8.7
SB_23305| Best HMM Match : RVT_1 (HMM E-Value=0.0013) 27 8.7
SB_17130| Best HMM Match : RVT_1 (HMM E-Value=0.0013) 27 8.7
>SB_2392| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 31.5 bits (68), Expect = 0.31
Identities = 21/84 (25%), Positives = 38/84 (45%)
Frame = +1
Query: 127 SAKLLEQCLTTENRAHVVENGLEKVVNVACVCTKNANSVDHSRVGTGILEHLFKHSESTC 306
S +++ Q L E + N K + V T+N ++ H+R G+ + H +++ T
Sbjct: 50 SRQVMMQQLLIEEKIRTNANSGVKQIRVFNTGTRNYHTATHTRTGSVLSIHDHANNDRTV 109
Query: 307 DDVIKLGGLDAVLFECRKNDVETF 378
+G L+ V F R ND +
Sbjct: 110 GMGEFVGVLNGVEFRTRHNDYRLY 133
>SB_57739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 31.1 bits (67), Expect = 0.41
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Frame = +1
Query: 175 VVENGLEKVVNVACVCTKNANSVDH------SRVGTGILEHLFKHSESTCDDVIKLGGLD 336
+ +N ++ +V V C+ + N + H RVG G+L+ ++ H C I L +
Sbjct: 284 IKQNRMKCLVRVRCIHSANQHRASHVTVFTRQRVGNGLLQAVYNHEYEKCVPAIVLAPVF 343
Query: 337 AV 342
AV
Sbjct: 344 AV 345
>SB_31372| Best HMM Match : Arm (HMM E-Value=0)
Length = 656
Score = 30.3 bits (65), Expect = 0.71
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Frame = +1
Query: 58 TSGGLDILMANCLESNNPELQFSSAKLLEQCLTTENR---AHVVENGLEKVVNVACVCTK 228
T + I+ A +++ L S +L++ CL T A E+GL+ ++ + V
Sbjct: 337 TDNKMAIVEAGGMQALAMHLGHQSNRLVQNCLWTLRNLSDAATKEDGLDNLLQML-VQLL 395
Query: 229 NANSVDHSRVGTGILEHLFKHSESTCDDVIKLGGLDAVLFEC 354
++N + GIL +L ++ V + GG++A++ C
Sbjct: 396 SSNDIQVVTCAAGILSNLTCNNPRNKQLVCRFGGIEALVRTC 437
>SB_33425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 957
Score = 30.3 bits (65), Expect = 0.71
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -3
Query: 258 NSRVVHGIRILRTNTCDVYDLFETILYDVRPVFCRET-LLK*F 133
+S V+ IRI TN D Y +FE +LY VF R+T +LK F
Sbjct: 342 DSLVMKDIRITATNDDD-YFVFEDLLYQAMLVFTRDTAVLKHF 383
>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2978
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 16 RGHELGYSLCNTLRTSGGLDILMANC--LESNNPELQFSSAKLLEQ 147
R H + Y C+ L T G+ C L+ NNP QF+S +L++
Sbjct: 2751 RAHMVSYQ-CSPLSTPDGIVATFRQCRRLQENNPGGQFASVVVLDE 2795
>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
Length = 4607
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 158 VVRHCSSNLADENCSSGLLDSKQFAIRMSKPPEVRNV 48
+VR C ++L D C G+L S++ + EVR++
Sbjct: 2645 IVRSCKNHLMDVACPDGVLRSEKSRLNHENDEEVRHL 2681
>SB_35866| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34)
Length = 758
Score = 28.7 bits (61), Expect = 2.2
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Frame = +1
Query: 112 ELQFSSAKLLEQCLTTENRAHVVENGLEKVVNVACVCTKNANSVDHSRVGTGILEHLFKH 291
ELQ + L ++CL +N ++E ++V ++ T N +D ++
Sbjct: 449 ELQNENLDLRKECLELDNENKILE---DEVKQLSEGSTPEGNDLD-----------IYGR 494
Query: 292 SESTC-DDVIKLGGLDAVLFECRKNDVE-TFETLRDGSS 402
SE C DD + + + FE R +D+E + LR G+S
Sbjct: 495 SEKLCLDDEVPISSCELEAFETRLSDLERQNKALRTGAS 533
>SB_44410| Best HMM Match : RCSD (HMM E-Value=7.2)
Length = 117
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1
Query: 386 SVSKVSTSFFLHSNSTASRPPNLMTSSQVLSLCLNRCS 273
S+ KV S SNST S PP+L + S+ + N S
Sbjct: 12 SIQKVDRSSASPSNSTVSNPPSLSSDSEPSTPATNALS 49
>SB_9603| Best HMM Match : Extensin_2 (HMM E-Value=0.0058)
Length = 339
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -1
Query: 410 ISSLEPSRSVSKVSTSFFLHSNSTASRPPNLMTSSQVLSLCLNRC 276
+ L S V +STS + ST+S +L TSS VL L C
Sbjct: 202 VHHLSTSSHVRHLSTSSHVRHLSTSSHVRHLSTSSHVLHLSTQSC 246
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 410 ISSLEPSRSVSKVSTSFFLHSNSTASRPPNLMTSSQVLSL 291
+ L S V +STS +H ST+S +L TSS V L
Sbjct: 184 VRHLSTSSHVRHLSTSSHVHHLSTSSHVRHLSTSSHVRHL 223
>SB_38786| Best HMM Match : HLH (HMM E-Value=1e-13)
Length = 817
Score = 27.9 bits (59), Expect = 3.8
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -1
Query: 128 DENCSSGLLDSKQF---AIRMSKPPEVRNVLQSE*PSSCPLVPN 6
D +CS L +S Q AI + P + V+Q+ PSSCP V N
Sbjct: 271 DVSCSFSL-ESNQMDDQAITWNDPSMLNTVVQNAAPSSCPAVLN 313
>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 27.5 bits (58), Expect = 5.0
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = -1
Query: 416 IEISSLE-PSRSVSKVSTSFFLHSNSTASR--PPNLMTSSQVLSLCLNRCSKMPVPTREW 246
I +SS + P+ + + + +S S+ SR P N +T+S +LS L +++ PTR
Sbjct: 187 ISVSSRKLPTSTRTYIKSSEASRSSLIPSRTMPTNRLTTSNMLSTLLTTTARLDEPTRMP 246
Query: 245 ST 240
ST
Sbjct: 247 ST 248
>SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13)
Length = 1297
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 335 SRPPNLMTSSQVLSLCLNRC 276
S+PPN MTS +V+ L+ C
Sbjct: 351 SKPPNTMTSDEVIQFMLSYC 370
>SB_22289| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1102
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 199 VVNVACVCTKNANSVDHSRVGTGILEHLFKHSESTC 306
V NV CTK N H G GI E +++S+C
Sbjct: 402 VNNVGFYCTKCPNGYQHGYSGFGIFECSECNNDSSC 437
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -1
Query: 404 SLEPSRSVSKVSTSFFLHSNSTASRPPNLMTSSQVLSLCLNRCSKMPVPTRE 249
SL P+ + S V + +++ T S PN TSS ++ +N + + T E
Sbjct: 732 SLSPNGTTSSVYETIAVNATPTISPSPNGTTSSVYETIAVNATPSISLSTNE 783
>SB_45045| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 1260
Score = 27.1 bits (57), Expect = 6.6
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 238 SVDHSRVGTGILEHLFKHSESTCDDVIKLGGLDAVLFECR-KNDVETFETLRDGSSELIS 414
S+D TG+ + L++ ES D++ K G + L R +DV T L SE +
Sbjct: 332 SIDSLLRPTGLPDDLYEEGESFADELEKEGDDEEFLDSIRIIDDVVTKGKLNMKGSECGT 391
Query: 415 IRWR 426
+ W+
Sbjct: 392 VHWK 395
>SB_38268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1071
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +1
Query: 223 TKNANSVDHSRVGTGILEHLFKHSESTCDDVIKLGGLDAVLFECRKNDVETF 378
T+N ++ H+R G+ + H +++ T +G L+ V F R ND +
Sbjct: 80 TRNYHTATHTRTGSVLAIHDHSNNDRTVGMGEFVGVLNGVEFRTRHNDYRLY 131
>SB_12340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 262 YQLESGPRNSHSSYKHMRRLRPFRDHSLRRAP 167
+ L + P +H H R PFR+H LR P
Sbjct: 207 HPLRNHPFRNHPFRNHPFRNHPFRNHPLRNHP 238
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -2
Query: 244 PRNSHSSYKHMRRLRPFRDHSLRRAP 167
P +H H R PFR+HS R P
Sbjct: 158 PLRNHPFRNHPFRNHPFRNHSFRNLP 183
>SB_52733| Best HMM Match : DUF948 (HMM E-Value=0.37)
Length = 1147
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 306 AGALAVLEQVLQNACTNSRVVHGIRILRTNTCDVYDLFE 190
A A+A+ E ++QN + + L NTC V D E
Sbjct: 946 AAAVAIAEMIIQNKVLEIVDLSNVPTLGDNTCCVLDAIE 984
>SB_23305| Best HMM Match : RVT_1 (HMM E-Value=0.0013)
Length = 808
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 271 KCLYQLESGPRNSHSSYK 218
KCL+QL GPR+ SS K
Sbjct: 301 KCLFQLIQGPRDKSSSSK 318
>SB_17130| Best HMM Match : RVT_1 (HMM E-Value=0.0013)
Length = 994
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 271 KCLYQLESGPRNSHSSYK 218
KCL+QL GPR+ SS K
Sbjct: 858 KCLFQLIQGPRDKSSSSK 875
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.133 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,902,149
Number of Sequences: 59808
Number of extensions: 317503
Number of successful extensions: 885
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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