Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0227
(428 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49936-5|CAE47467.1| 801|Caenorhabditis elegans Hypothetical pr... 44 4e-05
Z49936-3|CAD90174.1| 1000|Caenorhabditis elegans Hypothetical pr... 44 4e-05
Z49936-1|CAA90182.1| 930|Caenorhabditis elegans Hypothetical pr... 44 4e-05
AY834227-1|AAV91313.1| 984|Caenorhabditis elegans Toll and inte... 44 4e-05
AY834226-1|AAV91312.1| 931|Caenorhabditis elegans Toll and inte... 44 4e-05
Z99267-1|CAB16465.1| 732|Caenorhabditis elegans C33A12.12 protein. 31 0.35
Z98877-5|CAD56616.1| 731|Caenorhabditis elegans Hypothetical pr... 31 0.35
Z98877-4|CAB54473.2| 796|Caenorhabditis elegans Hypothetical pr... 31 0.35
Z68493-14|CAA92801.1| 732|Caenorhabditis elegans Hypothetical p... 31 0.35
AL033537-1|CAA22147.1| 732|Caenorhabditis elegans Hypothetical ... 31 0.35
U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/med... 27 4.3
U23450-5|AAK31466.3| 706|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z70311-4|CAA94373.1| 541|Caenorhabditis elegans Hypothetical pr... 27 5.7
AF043704-1|AAK21475.1| 487|Caenorhabditis elegans Hypothetical ... 27 5.7
Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z54270-5|CAA91031.2| 1339|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical pr... 27 7.5
AC024202-1|AAF36029.1| 285|Caenorhabditis elegans Hypothetical ... 27 7.5
Z81086-3|CAD56586.1| 711|Caenorhabditis elegans Hypothetical pr... 26 10.0
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr... 26 10.0
U52003-8|AAM97990.1| 441|Caenorhabditis elegans Hypothetical pr... 26 10.0
U52003-7|AAM97989.1| 555|Caenorhabditis elegans Hypothetical pr... 26 10.0
U34902-1|AAA97607.1| 393|Caenorhabditis elegans sma-3 protein. 26 10.0
U00046-9|AAC47050.2| 393|Caenorhabditis elegans Small protein 3... 26 10.0
AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosenso... 26 10.0
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso... 26 10.0
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor... 26 10.0
AF067945-7|ABQ13059.1| 954|Caenorhabditis elegans Mechanosensor... 26 10.0
AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensor... 26 10.0
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor... 26 10.0
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor... 26 10.0
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor... 26 10.0
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor... 26 10.0
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 26 10.0
AF016448-10|ABR92607.1| 849|Caenorhabditis elegans Smek (dictyo... 26 10.0
AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek (dictyos... 26 10.0
AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical ... 26 10.0
>Z49936-5|CAE47467.1| 801|Caenorhabditis elegans Hypothetical
protein F13B10.1e protein.
Length = 801
Score = 44.4 bits (100), Expect = 4e-05
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 3/134 (2%)
Frame = +1
Query: 25 ELGYSLCNTLRTSGGLDILMANCLESNNP---ELQFSSAKLLEQCLTTENRAHVVENGLE 195
+L +LC+ LR D L+ + N +++ K+LE+C ++ N ++V
Sbjct: 126 DLANALCDYLRDRDYFDKLIKMFISPNTAACDQVRMECGKVLEECTSSANLEYIVNKSYT 185
Query: 196 KVVNVACVCTKNANSVDHSRVGTGILEHLFKHSESTCDDVIKLGGLDAVLFECRKNDVET 375
K + + V K + D R+ ++ +LFKHS + +I+ +D ++ K E
Sbjct: 186 KKIMI--VAMKLNKTPDQQRLSLSLIGNLFKHSNAVSLSLIETDVIDHIILTF-KRAPEC 242
Query: 376 FETLRDGSSELISI 417
+ LR + L +I
Sbjct: 243 PDILRHAALALANI 256
>Z49936-3|CAD90174.1| 1000|Caenorhabditis elegans Hypothetical
protein F13B10.1c protein.
Length = 1000
Score = 44.4 bits (100), Expect = 4e-05
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 3/134 (2%)
Frame = +1
Query: 25 ELGYSLCNTLRTSGGLDILMANCLESNNP---ELQFSSAKLLEQCLTTENRAHVVENGLE 195
+L +LC+ LR D L+ + N +++ K+LE+C ++ N ++V
Sbjct: 309 DLANALCDYLRDRDYFDKLIKMFISPNTAACDQVRMECGKVLEECTSSANLEYIVNKSYT 368
Query: 196 KVVNVACVCTKNANSVDHSRVGTGILEHLFKHSESTCDDVIKLGGLDAVLFECRKNDVET 375
K + + V K + D R+ ++ +LFKHS + +I+ +D ++ K E
Sbjct: 369 KKIMI--VAMKLNKTPDQQRLSLSLIGNLFKHSNAVSLSLIETDVIDHIILTF-KRAPEC 425
Query: 376 FETLRDGSSELISI 417
+ LR + L +I
Sbjct: 426 PDILRHAALALANI 439
>Z49936-1|CAA90182.1| 930|Caenorhabditis elegans Hypothetical
protein F13B10.1a protein.
Length = 930
Score = 44.4 bits (100), Expect = 4e-05
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 3/134 (2%)
Frame = +1
Query: 25 ELGYSLCNTLRTSGGLDILMANCLESNNP---ELQFSSAKLLEQCLTTENRAHVVENGLE 195
+L +LC+ LR D L+ + N +++ K+LE+C ++ N ++V
Sbjct: 255 DLANALCDYLRDRDYFDKLIKMFISPNTAACDQVRMECGKVLEECTSSANLEYIVNKSYT 314
Query: 196 KVVNVACVCTKNANSVDHSRVGTGILEHLFKHSESTCDDVIKLGGLDAVLFECRKNDVET 375
K + + V K + D R+ ++ +LFKHS + +I+ +D ++ K E
Sbjct: 315 KKIMI--VAMKLNKTPDQQRLSLSLIGNLFKHSNAVSLSLIETDVIDHIILTF-KRAPEC 371
Query: 376 FETLRDGSSELISI 417
+ LR + L +I
Sbjct: 372 PDILRHAALALANI 385
>AY834227-1|AAV91313.1| 984|Caenorhabditis elegans Toll and
interleukin 1 receptordomain protein isoform c protein.
Length = 984
Score = 44.4 bits (100), Expect = 4e-05
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 3/134 (2%)
Frame = +1
Query: 25 ELGYSLCNTLRTSGGLDILMANCLESNNP---ELQFSSAKLLEQCLTTENRAHVVENGLE 195
+L +LC+ LR D L+ + N +++ K+LE+C ++ N ++V
Sbjct: 309 DLANALCDYLRDRDYFDKLIKMFISPNTAACDQVRMECGKVLEECTSSANLEYIVNKSYT 368
Query: 196 KVVNVACVCTKNANSVDHSRVGTGILEHLFKHSESTCDDVIKLGGLDAVLFECRKNDVET 375
K + + V K + D R+ ++ +LFKHS + +I+ +D ++ K E
Sbjct: 369 KKIMI--VAMKLNKTPDQQRLSLSLIGNLFKHSNAVSLSLIETDVIDHIILTF-KRAPEC 425
Query: 376 FETLRDGSSELISI 417
+ LR + L +I
Sbjct: 426 PDILRHAALALANI 439
>AY834226-1|AAV91312.1| 931|Caenorhabditis elegans Toll and
interleukin 1 receptordomain protein isoform a protein.
Length = 931
Score = 44.4 bits (100), Expect = 4e-05
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 3/134 (2%)
Frame = +1
Query: 25 ELGYSLCNTLRTSGGLDILMANCLESNNP---ELQFSSAKLLEQCLTTENRAHVVENGLE 195
+L +LC+ LR D L+ + N +++ K+LE+C ++ N ++V
Sbjct: 256 DLANALCDYLRDRDYFDKLIKMFISPNTAACDQVRMECGKVLEECTSSANLEYIVNKSYT 315
Query: 196 KVVNVACVCTKNANSVDHSRVGTGILEHLFKHSESTCDDVIKLGGLDAVLFECRKNDVET 375
K + + V K + D R+ ++ +LFKHS + +I+ +D ++ K E
Sbjct: 316 KKIMI--VAMKLNKTPDQQRLSLSLIGNLFKHSNAVSLSLIETDVIDHIILTF-KRAPEC 372
Query: 376 FETLRDGSSELISI 417
+ LR + L +I
Sbjct: 373 PDILRHAALALANI 386
>Z99267-1|CAB16465.1| 732|Caenorhabditis elegans C33A12.12 protein.
Length = 732
Score = 31.1 bits (67), Expect = 0.35
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 265 GILEHLFKHSESTCDDVIKLGGLDAVLFECRKNDVETFETL 387
G+L+ + C ++I +GG+D +LF+C K V+ +TL
Sbjct: 506 GVLQLFSLINHDACRNIISVGGID-ILFKCLKLAVKDIQTL 545
>Z98877-5|CAD56616.1| 731|Caenorhabditis elegans Hypothetical
protein Y69H2.3c protein.
Length = 731
Score = 31.1 bits (67), Expect = 0.35
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 377 KVSTSFFLHSNSTASRPPNLMTSSQVLSLCLNRCSKMPVP 258
+V+ +H NST P + +Q +S CLN CS+ P
Sbjct: 473 QVACVSIVHLNSTTPAPGSTCAKNQTMSDCLNTCSEDKCP 512
>Z98877-4|CAB54473.2| 796|Caenorhabditis elegans Hypothetical
protein Y69H2.3b protein.
Length = 796
Score = 31.1 bits (67), Expect = 0.35
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 377 KVSTSFFLHSNSTASRPPNLMTSSQVLSLCLNRCSKMPVP 258
+V+ +H NST P + +Q +S CLN CS+ P
Sbjct: 538 QVACVSIVHLNSTTPAPGSTCAKNQTMSDCLNTCSEDKCP 577
>Z68493-14|CAA92801.1| 732|Caenorhabditis elegans Hypothetical
protein C33A12.12 protein.
Length = 732
Score = 31.1 bits (67), Expect = 0.35
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 265 GILEHLFKHSESTCDDVIKLGGLDAVLFECRKNDVETFETL 387
G+L+ + C ++I +GG+D +LF+C K V+ +TL
Sbjct: 506 GVLQLFSLINHDACRNIISVGGID-ILFKCLKLAVKDIQTL 545
>AL033537-1|CAA22147.1| 732|Caenorhabditis elegans Hypothetical
protein C33A12.12 protein.
Length = 732
Score = 31.1 bits (67), Expect = 0.35
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 265 GILEHLFKHSESTCDDVIKLGGLDAVLFECRKNDVETFETL 387
G+L+ + C ++I +GG+D +LF+C K V+ +TL
Sbjct: 506 GVLQLFSLINHDACRNIISVGGID-ILFKCLKLAVKDIQTL 545
>U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/medium
chain (clathrinassociated complex) protein 3 protein.
Length = 414
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 131 PNYLSNVSRQKTGRTS*RMVSKRS*TSHVFVRRMRIPWTTLE 256
PN+L N++ Q TGRT+ S++ RR + +T E
Sbjct: 137 PNFLRNIANQVTGRTNLSETLPTGQLSNIPWRRQGVKYTNNE 178
>U23450-5|AAK31466.3| 706|Caenorhabditis elegans Hypothetical
protein C30B5.1 protein.
Length = 706
Score = 27.5 bits (58), Expect = 4.3
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Frame = +1
Query: 163 NRAHVVENGLEKVVNVACVCTKNANSVDHSRVGTGILEHLFKHSESTCDDVIKLGGLD-- 336
N + ++ L + + C C N + + G + +H + DDVI GGL+
Sbjct: 29 NNPSINDSSLPERLPAMCGCDSQ-NREESANSGVQLSDHANESLSKQADDVIYEGGLEDK 87
Query: 337 AVLFECRKNDVETFETLRDG 396
+F D + E L DG
Sbjct: 88 DSVFRAIIEDDDACEVLDDG 107
>Z70311-4|CAA94373.1| 541|Caenorhabditis elegans Hypothetical
protein T25B9.5 protein.
Length = 541
Score = 27.1 bits (57), Expect = 5.7
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 79 LMANCLESNNPELQFSSAKLLEQCLTTENRAHVVENG--LEKVVNVACVCTKNAN 237
LMA C ++P L S K + + TE R H +ENG E +V + C +N N
Sbjct: 368 LMARC--EHDP-LYPKSLKDAKAWILTEERPHKMENGDPKELMVLIDACCERNPN 419
>AF043704-1|AAK21475.1| 487|Caenorhabditis elegans Hypothetical
protein W01B11.3 protein.
Length = 487
Score = 27.1 bits (57), Expect = 5.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 256 VGTGILEHLFKHSESTCDDVIKLGGLDAVLFECRKN 363
+GT I + H + CD VI+L A LF+ KN
Sbjct: 240 MGTDISDIDLIHIKGLCDQVIELSAYRAQLFDYLKN 275
>Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical
protein T28B8.3a protein.
Length = 1838
Score = 26.6 bits (56), Expect = 7.5
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +1
Query: 148 CLTTENRAHVVENGLEKVVNVACVCTKNANSVDHSRVGTGILEHLFKHSESTCDDVIKLG 327
CL ++ +VE+ LEK++ V + A + S G + KH E + + K G
Sbjct: 545 CLLSKRVPSLVEHTLEKLLEVITCLSVEAPNTSDSTGGVSLSLEYQKHGED--ETIFKNG 602
Query: 328 --GLDAVLFECRKND 366
L +V+F+ R ND
Sbjct: 603 FSRLISVIFD-RVND 616
>Z54270-5|CAA91031.2| 1339|Caenorhabditis elegans Hypothetical
protein F11C1.5b protein.
Length = 1339
Score = 26.6 bits (56), Expect = 7.5
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +3
Query: 12 HEGTRTWLFTLQYIADFGWLRHSDGELFGV*QSGTAVLICQIT*AMSH 155
H T T+Q + + G +RH D L +SG ++I + A H
Sbjct: 751 HRDTTVQTLTMQTVVENGIIRHEDSALVKAARSGQILVIDEADKAPLH 798
>Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical
protein F11C1.5a protein.
Length = 1804
Score = 26.6 bits (56), Expect = 7.5
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +3
Query: 12 HEGTRTWLFTLQYIADFGWLRHSDGELFGV*QSGTAVLICQIT*AMSH 155
H T T+Q + + G +RH D L +SG ++I + A H
Sbjct: 751 HRDTTVQTLTMQTVVENGIIRHEDSALVKAARSGQILVIDEADKAPLH 798
>AC024202-1|AAF36029.1| 285|Caenorhabditis elegans Hypothetical
protein Y71H2B.8 protein.
Length = 285
Score = 26.6 bits (56), Expect = 7.5
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = -1
Query: 425 RHRIEISSLEPSRSVSKVSTSFFLHSNSTASRPPNLMTSSQVLSLCLNRCSK 270
RHRIEISS E S + + T+F L +NS P L QVLSL +N S+
Sbjct: 166 RHRIEISSSE-SVTDKYIKTAFNLINNS-----PKL----QVLSLHVNNLSE 207
>Z81086-3|CAD56586.1| 711|Caenorhabditis elegans Hypothetical
protein F53B6.2b protein.
Length = 711
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +2
Query: 242 WTTLELVQAFWSTCSSTARAPAMT 313
W LV WSTCSST M+
Sbjct: 40 WQAPRLVAGEWSTCSSTCGTGVMS 63
>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical
protein F53B6.2a protein.
Length = 1045
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +2
Query: 242 WTTLELVQAFWSTCSSTARAPAMT 313
W LV WSTCSST M+
Sbjct: 374 WQAPRLVAGEWSTCSSTCGTGVMS 397
>U52003-8|AAM97990.1| 441|Caenorhabditis elegans Hypothetical
protein ZK381.5b protein.
Length = 441
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 214 CVCTKNANSVDHSRVGTGI 270
CVC+KN V +SRVG +
Sbjct: 222 CVCSKNLLGVKYSRVGESL 240
>U52003-7|AAM97989.1| 555|Caenorhabditis elegans Hypothetical
protein ZK381.5a protein.
Length = 555
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 214 CVCTKNANSVDHSRVGTGI 270
CVC+KN V +SRVG +
Sbjct: 336 CVCSKNLLGVKYSRVGESL 354
>U34902-1|AAA97607.1| 393|Caenorhabditis elegans sma-3 protein.
Length = 393
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 303 GALAVLEQVLQNACTNSRVV 244
G L LE VL N CTNSR +
Sbjct: 47 GTLEDLECVLANPCTNSRCI 66
>U00046-9|AAC47050.2| 393|Caenorhabditis elegans Small protein 3
protein.
Length = 393
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 303 GALAVLEQVLQNACTNSRVV 244
G L LE VL N CTNSR +
Sbjct: 47 GTLEDLECVLANPCTNSRCI 66
>AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform g protein.
Length = 1604
Score = 26.2 bits (55), Expect = 10.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 206 TSHVFVRRMRIPWTTLELVQAFWSTCSSTARAPAMTSS 319
TS RMR P T V T SST ++P+ T+S
Sbjct: 393 TSSPTTTRMRSPSTHKSTVSQATKTASSTPQSPSTTTS 430
>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform f protein.
Length = 1818
Score = 26.2 bits (55), Expect = 10.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 206 TSHVFVRRMRIPWTTLELVQAFWSTCSSTARAPAMTSS 319
TS RMR P T V T SST ++P+ T+S
Sbjct: 607 TSSPTTTRMRSPSTHKSTVSQATKTASSTPQSPSTTTS 644
>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform e protein.
Length = 1954
Score = 26.2 bits (55), Expect = 10.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 206 TSHVFVRRMRIPWTTLELVQAFWSTCSSTARAPAMTSS 319
TS RMR P T V T SST ++P+ T+S
Sbjct: 743 TSSPTTTRMRSPSTHKSTVSQATKTASSTPQSPSTTTS 780
>AF067945-7|ABQ13059.1| 954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform i protein.
Length = 954
Score = 26.2 bits (55), Expect = 10.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 206 TSHVFVRRMRIPWTTLELVQAFWSTCSSTARAPAMTSS 319
TS RMR P T V T SST ++P+ T+S
Sbjct: 792 TSSPTTTRMRSPSTHKSTVSQATKTASSTPQSPSTTTS 829
>AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform c protein.
Length = 1167
Score = 26.2 bits (55), Expect = 10.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 206 TSHVFVRRMRIPWTTLELVQAFWSTCSSTARAPAMTSS 319
TS RMR P T V T SST ++P+ T+S
Sbjct: 792 TSSPTTTRMRSPSTHKSTVSQATKTASSTPQSPSTTTS 829
>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform b protein.
Length = 1685
Score = 26.2 bits (55), Expect = 10.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 206 TSHVFVRRMRIPWTTLELVQAFWSTCSSTARAPAMTSS 319
TS RMR P T V T SST ++P+ T+S
Sbjct: 792 TSSPTTTRMRSPSTHKSTVSQATKTASSTPQSPSTTTS 829
>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform d protein.
Length = 1995
Score = 26.2 bits (55), Expect = 10.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 206 TSHVFVRRMRIPWTTLELVQAFWSTCSSTARAPAMTSS 319
TS RMR P T V T SST ++P+ T+S
Sbjct: 784 TSSPTTTRMRSPSTHKSTVSQATKTASSTPQSPSTTTS 821
>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform h protein.
Length = 2006
Score = 26.2 bits (55), Expect = 10.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 206 TSHVFVRRMRIPWTTLELVQAFWSTCSSTARAPAMTSS 319
TS RMR P T V T SST ++P+ T+S
Sbjct: 795 TSSPTTTRMRSPSTHKSTVSQATKTASSTPQSPSTTTS 832
>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform a protein.
Length = 2007
Score = 26.2 bits (55), Expect = 10.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 206 TSHVFVRRMRIPWTTLELVQAFWSTCSSTARAPAMTSS 319
TS RMR P T V T SST ++P+ T+S
Sbjct: 796 TSSPTTTRMRSPSTHKSTVSQATKTASSTPQSPSTTTS 833
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
on autosome protein2 protein.
Length = 1758
Score = 26.2 bits (55), Expect = 10.0
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -1
Query: 425 RHRIEISSLEPSRSVSKVSTSFFLHSNSTASRPPN 321
R +S+L+ R+ KV+ S SNS ASRPP+
Sbjct: 733 RQLCSMSNLKRHRATCKVAASS--SSNSAASRPPS 765
>AF016448-10|ABR92607.1| 849|Caenorhabditis elegans Smek
(dictyostelium suppressorof mek null) homolog protein 1,
isoform b protein.
Length = 849
Score = 26.2 bits (55), Expect = 10.0
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +1
Query: 94 LESNNPELQFSSAKLLEQCLTTENRAHVVENGLEKVVNVACVC-TKNANSVDHSRVGTGI 270
L+S + L S+ KLL++ +T ++ ++ EKV++ C KN N ++ + + +
Sbjct: 477 LKSKHSFLVLSALKLLQRVVTVKDDKYIRYIVKEKVLDPVMECFRKNGNR--YNIINSSV 534
Query: 271 LEHLFKHSES 300
L HLF+ S
Sbjct: 535 L-HLFEFVRS 543
>AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek
(dictyostelium suppressorof mek null) homolog protein 1,
isoform a protein.
Length = 1085
Score = 26.2 bits (55), Expect = 10.0
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +1
Query: 94 LESNNPELQFSSAKLLEQCLTTENRAHVVENGLEKVVNVACVC-TKNANSVDHSRVGTGI 270
L+S + L S+ KLL++ +T ++ ++ EKV++ C KN N ++ + + +
Sbjct: 713 LKSKHSFLVLSALKLLQRVVTVKDDKYIRYIVKEKVLDPVMECFRKNGNR--YNIINSSV 770
Query: 271 LEHLFKHSES 300
L HLF+ S
Sbjct: 771 L-HLFEFVRS 779
>AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical
protein F43E2.3 protein.
Length = 631
Score = 26.2 bits (55), Expect = 10.0
Identities = 19/77 (24%), Positives = 34/77 (44%)
Frame = +1
Query: 52 LRTSGGLDILMANCLESNNPELQFSSAKLLEQCLTTENRAHVVENGLEKVVNVACVCTKN 231
L T GGLD+++ L ++ +A +L Q LT A + N +E +++
Sbjct: 410 LLTQGGLDLVIDRLLSISSSICSVEAAGILTQ-LTNPQSAFIRLNHVEPIISRLLDLIDQ 468
Query: 232 ANSVDHSRVGTGILEHL 282
S D + T L ++
Sbjct: 469 CKSGDSLLLATAALNNV 485
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.133 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,814,011
Number of Sequences: 27780
Number of extensions: 222084
Number of successful extensions: 742
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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