Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0227
         (428 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   1.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.9  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               22   3.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   3.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   4.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   7.7  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 253 ESGPRNSHSSYKHM 212
           E  PR SH SY HM
Sbjct: 154 EITPRQSHQSYHHM 167


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 18/70 (25%), Positives = 32/70 (45%)
 Frame = +1

Query: 100  SNNPELQFSSAKLLEQCLTTENRAHVVENGLEKVVNVACVCTKNANSVDHSRVGTGILEH 279
            S + +   S  +LL  C++ +     + + +   VN   V  +N   VD S   +     
Sbjct: 905  SESSKKVLSPGELLSSCVSNDGGCSSLVD-VSTPVNKK-VYKQNDYIVDESSSSSFYSSF 962

Query: 280  LFKHSESTCD 309
            L+K SES+C+
Sbjct: 963  LYKSSESSCN 972


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 10/44 (22%), Positives = 19/44 (43%)
 Frame = +1

Query: 73  DILMANCLESNNPELQFSSAKLLEQCLTTENRAHVVENGLEKVV 204
           +I +   +E  N +      K+L +C+         ENGL  ++
Sbjct: 93  EIQLDKLVEMANRKNISIDVKMLSECINANKSTDKCENGLNFII 136


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 7   FGTRGHELGYSLCNTLRTSGGLDILMANCLESNNPELQFSSAKLLEQ 147
           +G   H + +S    L   G    +  NCL+ N P+L   + K ++Q
Sbjct: 571 YGNISHFINHSCDPNLAVYG----VWINCLDPNLPKLALFATKDIKQ 613


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 350 SNSTASRPPNLMTSSQVLSLC 288
           S +T + PP L T   V +LC
Sbjct: 447 SPATTAAPPQLPTEESVDALC 467


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 12/50 (24%), Positives = 20/50 (40%)
 Frame = +1

Query: 118 QFSSAKLLEQCLTTENRAHVVENGLEKVVNVACVCTKNANSVDHSRVGTG 267
           Q+   K L+ CL       V+   LEK      + T  ++   +  +G G
Sbjct: 429 QYDLKKNLKVCLPPGQYCDVISGNLEKGRCTGKIVTVGSDGNANIEIGAG 478


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.133    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,056
Number of Sequences: 438
Number of extensions: 2489
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)