Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0227
         (428 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12250.1 68414.m01417 thylakoid lumenal protein-related weak ...    29   1.3  
At3g22780.1 68416.m02872 CXC domain protein (TSO1) identical to ...    28   2.3  
At5g58680.1 68418.m07352 armadillo/beta-catenin repeat family pr...    28   3.1  
At4g37650.1 68417.m05325 short-root transcription factor (SHR)         28   3.1  
At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil...    27   4.1  
At5g60720.1 68418.m07619 expressed protein contains Pfam profile...    27   7.1  
At3g57660.1 68416.m06424 DNA-directed RNA polymerase family prot...    27   7.1  
At2g38950.1 68415.m04786 transcription factor jumonji (jmj) fami...    27   7.1  
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit...    27   7.1  
At5g52830.1 68418.m06558 WRKY family transcription factor              26   9.4  
At3g58990.1 68416.m06575 aconitase C-terminal domain-containing ...    26   9.4  
At3g03160.1 68416.m00312 expressed protein                             26   9.4  
At1g64200.1 68414.m07273 vacuolar ATP synthase subunit E, putati...    26   9.4  
At1g18440.1 68414.m02301 peptidyl-tRNA hydrolase family protein ...    26   9.4  

>At1g12250.1 68414.m01417 thylakoid lumenal protein-related weak
           similarity to SP|O22160 Thylakoid lumenal 15 kDa
           protein, chloroplast precursor (p15) {Arabidopsis
           thaliana}; contains Pfam profile PF00805: Pentapeptide
           repeats (8 copies)
          Length = 280

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 341 CCSNAEKTTWKPLRHCATALANLSLYGG 424
           CCS+AE  TWK +   A A A ++   G
Sbjct: 58  CCSSAESNTWKRILSAAMAAAVIASSSG 85


>At3g22780.1 68416.m02872 CXC domain protein (TSO1) identical to CXC
           domain protein TSO1 [Arabidopsis thaliana] GI:7767425
          Length = 695

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -1

Query: 410 ISSLEPSRSVSKVSTSFFLHSNSTASRPPNLMTSSQVLS 294
           IS+L P  SV  +ST+    S S  S PP + TS  V+S
Sbjct: 30  ISNLSPIESVKSISTAQTFSSLSFTS-PPPVFTSPHVIS 67


>At5g58680.1 68418.m07352 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeats (4 copies)
          Length = 357

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 49  TLRTSGGLDILMANCLESNNPELQF-SSAKLLEQCLTTENRAHVVENGLEK 198
           T+  SG + +L+ N LE+     +  +S  L   C T EN+   VE+G+ K
Sbjct: 180 TIGRSGAIPLLV-NLLENGGFRAKKDASTALYSLCSTNENKTRAVESGIMK 229


>At4g37650.1 68417.m05325 short-root transcription factor (SHR) 
          Length = 531

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 417 YRDKFARAVAQCLKGFHVVFSAFEQHRIQTS 325
           + D+F R   +CL+ F V F ++E+   +TS
Sbjct: 403 FDDEFLRGFGECLRWFRVCFESWEESFPRTS 433


>At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF02136: Nuclear transport factor
           2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
           RRM, RBD, or RNP domain)
          Length = 422

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +1

Query: 229 NANSVDHSRVGTGILEHLFKHSESTCDDVIKLGGLDAVLFE-CRKNDVETFETLRDGSSE 405
           NA SVD   VG G ++  + H   +  +V K    D+++       ++ T ++L+  + +
Sbjct: 6   NAPSVDPQFVGNGFVQEYYNHLYDSTSEVHKFYLEDSMISRPGLDGEIVTIKSLKGINDQ 65

Query: 406 LISIRWR 426
           ++SI ++
Sbjct: 66  IMSIDYK 72


>At5g60720.1 68418.m07619 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547
          Length = 691

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 40  LCNTLRTSGGLDILMANCLESNNPELQFSSA 132
           +CN L TSG L   M +C ++ N +   SS+
Sbjct: 644 VCNQLPTSGSLRKSMVDCFKNPNSKASSSSS 674


>At3g57660.1 68416.m06424 DNA-directed RNA polymerase family protein
           similar to SP|O35134 DNA-directed RNA polymerase I
           largest subunit (EC 2.7.7.6) (RNA polymerase I 194 kDa
           subunit) (RPA194) {Mus musculus}; contains InterPro
           accession IPR000722: RNA polymerase, alpha subunit
          Length = 1670

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 73  DILMANCLESNNPELQFSSAKLLEQCLTTENRAHVVENGLE 195
           DI+ A  LESN P    SS +  E  +TT++     ++ +E
Sbjct: 146 DIVSAKQLESNTPTKSKSSDESCESVVTTDSSEECEDSDVE 186


>At2g38950.1 68415.m04786 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 708

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = -1

Query: 395 PSRSVSKVSTSFFLHSNSTASRPPNLMTSSQVLSLCLNRCS-KMPVPTREWSTE 237
           PS S SK S+ + L  NSTA  P +L++     S+C+ R S  M + ++ W +E
Sbjct: 286 PSES-SKYSSGWNL--NSTAKLPGSLLSLEDCESVCVPRLSVGMCLSSQFWKSE 336


>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
           family protein low similarity to extensin [Volvox
           carteri] GI:21992
          Length = 312

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = -1

Query: 407 SSLEPSRSVSKVSTSFFLHSNSTASRPPNLMTSSQVLSLCLNRCSKMPVP 258
           SSL PS S   +S S    S+S +S PP+ ++ S    L L+  S  P P
Sbjct: 25  SSLSPSSSSPSLSPS--PPSSSPSSAPPSSLSPSSPPPLSLSPSSPPPPP 72


>At5g52830.1 68418.m06558 WRKY family transcription factor
          Length = 348

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 167 LFSVVRHCSSNLADENCSSGLLDSKQFAIRMSKPP 63
           LF+VVR CSS+++  N  +G  D      +   PP
Sbjct: 8   LFAVVRSCSSSVSTTNSCAGHEDDIGNCKQQQDPP 42


>At3g58990.1 68416.m06575 aconitase C-terminal domain-containing
           protein contains Pfam profile PF00694: Aconitase
           C-terminal domain
          Length = 253

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 349 ECRKNDVETFETLRDGSSELIS 414
           EC+  DV T E   DGSS LI+
Sbjct: 195 ECKTGDVVTIEHKEDGSSLLIN 216


>At3g03160.1 68416.m00312 expressed protein
          Length = 130

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 148 IAQVIWQMRTAVPDC*TPNNSPSECLSHPKSAMYCKVNS 32
           +  + W+  T +P C   + +PSE L H KS M  + N+
Sbjct: 56  LMDIYWKYET-MPSCDGDSCTPSEHLRHQKSMMKSQRNA 93


>At1g64200.1 68414.m07273 vacuolar ATP synthase subunit E, putative
           / V-ATPase E subunit, putative / vacuolar proton pump E
           subunit, putative similar to SP|Q39258 Vacuolar ATP
           synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit)
           (Vacuolar proton pump E subunit) {Arabidopsis thaliana};
           contains Pfam profile PF01991: ATP synthase (E/31 kDa)
           subunit
          Length = 237

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 337 AVLFECRKNDVETFETLRDGSSE 405
           AVL  CR+ D++  E++ D +SE
Sbjct: 135 AVLLRCREEDLDIVESMLDDASE 157


>At1g18440.1 68414.m02301 peptidyl-tRNA hydrolase family protein
           contains Pfam profile PF01195: peptidyl-tRNA hydrolase
          Length = 288

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 67  GLDILMANCLESNNPELQFSSAKLLEQ 147
           GL+ LM+ CL S++  L FSS     Q
Sbjct: 46  GLEGLMSQCLSSSSQSLSFSSNSFSSQ 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.133    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,099,757
Number of Sequences: 28952
Number of extensions: 202669
Number of successful extensions: 708
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)