Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0225
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    27   1.6  
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    27   2.8  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    26   3.7  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    25   6.4  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   8.5  

>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 163 DPRFHDVVQEWLKNAVSFVEDPR 95
           DP  ++V  E LKN V++V DPR
Sbjct: 40  DPALNEVRTEKLKNGVTYVCDPR 62


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 312 SFPWRRPRFYAKNPTK*CRSNPARH 238
           S  WR PRF+ K  T   +S+P++H
Sbjct: 193 SVKWRMPRFWLKRRTN-VKSSPSQH 216


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 246 PDYSYTIWLDSLRKNVV 296
           PDY Y +W D + +N +
Sbjct: 111 PDYEYILWTDEMSRNFI 127


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +3

Query: 276 SLRKNVVVAKEMISCGYK 329
           SL KN+ +A+++ SCG+K
Sbjct: 277 SLMKNLAMARDLWSCGWK 294


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 7/20 (35%), Positives = 16/20 (80%)
 Frame = +1

Query: 25  AKLLKILVNCYPTKIHAIHI 84
           + L KI+++CY  +IH++++
Sbjct: 41  SNLQKIVLDCYQAEIHSVYV 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,394,660
Number of Sequences: 5004
Number of extensions: 47317
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)