Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0225
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_1045 - 22535516-22535593,22535681-22535756,22535843-225359...    30   1.6  
11_06_0653 + 25911162-25911272,25911648-25911694,25912877-259133...    29   2.2  
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486...    28   5.0  
06_03_1118 + 27756288-27756337,27756505-27756619,27756883-277570...    28   6.6  
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788...    27   8.7  

>10_08_1045 -
           22535516-22535593,22535681-22535756,22535843-22535946,
           22536048-22536176,22536539-22536700,22537029-22537259,
           22537345-22537428,22537515-22537583,22537671-22537739,
           22537827-22537889,22537913-22538052,22538527-22539097
          Length = 591

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +3

Query: 243 WPDYSYTIWLDSLRKNVVVAKEMISCG---YKFREHELNQDVLEHLTKEGIQ 389
           WPD+  T W  ++ +N+ +  +++SCG    K  EH     + +  T E I+
Sbjct: 519 WPDHHITSWEVTVIQNLPLQGDLVSCGLFVLKNMEHWQGNRLSKEYTHEDIK 570


>11_06_0653 +
           25911162-25911272,25911648-25911694,25912877-25913355,
           25914089-25914249,25914324-25914519,25914745-25914807,
           25914898-25915047,25915148-25915494
          Length = 517

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
 Frame = +3

Query: 27  QITQDTCELLPNEDTRDPH--NQSLLGSSTKLTAFLSHS*TTS*NRGSISTVMTSHRFTS 200
           Q+  +    + NE +  P   N +L GSST+   FL H+ TTS + G  ++ +  +  T 
Sbjct: 358 QVANEEVLSIRNEASSVPSMDNNTLGGSSTQQQCFLEHN-TTSESDG--NSFLPGNPSTD 414

Query: 201 TSARDYLPESYGGVWPDYSY 260
            + RD+L E    +  D S+
Sbjct: 415 DAVRDHLAELEKALLEDESW 434


>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
            29048829-29049210,29049370-29049513,29049593-29049777,
            29049925-29050051,29050603-29050676,29051071-29051147,
            29051256-29051292,29051453-29051619,29051800-29051983,
            29052053-29052130,29052451-29052570,29052648-29052707,
            29053057-29053179,29053848-29053941,29054019-29054197,
            29054737-29055039,29055373-29055474,29055553-29055693,
            29055831-29055995,29056168-29056344,29056432-29056554,
            29057787-29057867,29057983-29058099,29058214-29058386,
            29058846-29058923,29058994-29059141,29059755-29059877,
            29060015-29060071,29060145-29060255,29060382-29060573,
            29060690-29060863,29061263-29061373,29061462-29061531,
            29061734-29061812,29061898-29062000,29062086-29062256,
            29062348-29062470,29062548-29062661,29062935-29063041,
            29063117-29063168,29063245-29063351,29063589-29063703,
            29063819-29063929,29064016-29064153,29064230-29064352,
            29064535-29064606,29064774-29064886,29066780-29067110,
            29067199-29067381,29068669-29068863,29068943-29069110,
            29069208-29069340,29069511-29069595,29069726-29069765
          Length = 2591

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +3

Query: 216  YLPESYGGVWPDYSYTIW---LDSLR-KNVVVAKEMISCGYKFREH 341
            YLP S GGV+ +Y   +    LD L  +N  V    +S G+ F EH
Sbjct: 1682 YLPRSLGGVFQNYLQIVLPAILDGLADENESVRDAALSAGHVFVEH 1727


>06_03_1118 +
           27756288-27756337,27756505-27756619,27756883-27757033,
           27757219-27757301,27757424-27757519,27757615-27757757,
           27757858-27757942,27758158-27758237,27758335-27758422
          Length = 296

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 8/30 (26%), Positives = 20/30 (66%)
 Frame = +3

Query: 297 VAKEMISCGYKFREHELNQDVLEHLTKEGI 386
           +A+ ++  GYK   H++N++ ++  + +GI
Sbjct: 1   MARNLVMAGYKVTVHDVNENTMKKFSDDGI 30


>09_06_0048 +
           20477076-20478547,20478643-20478722,20478880-20478893,
           20480164-20481199,20481275-20481402,20481673-20481732,
           20481774-20481878,20481971-20482055,20482315-20482470,
           20482562-20482831,20482877-20483671,20483844-20483903,
           20484062-20485134
          Length = 1777

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = -3

Query: 192 SDVTSLPWK*ILDFMTSFKNGLKTL*ALSKIPG-VIDYVDRVYLR 61
           ++ TS   K +LDF+ + KNG K++ +  ++   ++DY+ R  LR
Sbjct: 671 AEETSWASKELLDFVANMKNGDKSVLSQFEVQSLLLDYIKRENLR 715


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,579,720
Number of Sequences: 37544
Number of extensions: 277962
Number of successful extensions: 545
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)