Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0225
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52450| Best HMM Match : DUF1222 (HMM E-Value=0)                     31   0.71 
SB_44751| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_33752| Best HMM Match : I-set (HMM E-Value=3.7e-15)                 29   2.2  

>SB_52450| Best HMM Match : DUF1222 (HMM E-Value=0)
          Length = 640

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 159 GSISTVMTSHRFTSTSARDYLPESYGGVWPDYSY 260
           GSI+   T   F  T  R  +P+  GG+W +Y +
Sbjct: 473 GSITKERTEVIFQGTRNRTIIPDDQGGIWQEYEF 506


>SB_44751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 842

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/79 (26%), Positives = 35/79 (44%)
 Frame = +3

Query: 144 TS*NRGSISTVMTSHRFTSTSARDYLPESYGGVWPDYSYTIWLDSLRKNVVVAKEMISCG 323
           T  +  +I    T +  + T+ RD   E Y     D     W D++    V+ K ++   
Sbjct: 299 TGGHASNIPNPETKNMVSFTTKRDGHVEGYYSEKKDRLMLFWEDNVNGRHVIRKAIVGLS 358

Query: 324 YKFREHELNQDVLEHLTKE 380
            KF   E++Q+V   +TKE
Sbjct: 359 TKFFAREVSQEVCT-VTKE 376


>SB_33752| Best HMM Match : I-set (HMM E-Value=3.7e-15)
          Length = 783

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 205 DVLVKRCDVITVEIDPRFHDVVQEWLKNAVSFVEDPR 95
           D+ VK  + +T++++ +      EW KNAV  VE  R
Sbjct: 338 DIEVKEGENVTLDVEVKAEHYELEWYKNAVDVVEGGR 374


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,506,335
Number of Sequences: 59808
Number of extensions: 331953
Number of successful extensions: 780
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)