Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0225
         (599 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51670.1 68416.m05666 SEC14 cytosolic factor family protein /...    30   1.0  
At4g20930.1 68417.m03033 3-hydroxyisobutyrate dehydrogenase, put...    29   1.8  
At5g10760.1 68418.m01250 aspartyl protease family protein contai...    28   4.1  
At1g72140.1 68414.m08341 proton-dependent oligopeptide transport...    28   4.1  
At4g20850.1 68417.m03025 subtilase family protein contains simil...    27   9.5  
At4g20140.1 68417.m02947 leucine-rich repeat transmembrane prote...    27   9.5  

>At3g51670.1 68416.m05666 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein similar to
           polyphosphoinositide binding protein Ssh2p (GI:2739046)
           {Glycine max};; contains Pfam PF00650 : CRAL/TRIO
           domain; contains Pfam PF03765 : CRAL/TRIO, N-terminus
          Length = 409

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +2

Query: 95  PGIFDKAYSVFKPFLNDVMKSRIYF--HGNDVTSLHKHISP 211
           P  F   YS+F PFL    KS+      GN   +L+K I P
Sbjct: 239 PWYFSVIYSMFSPFLTQRTKSKFVMSKEGNAAETLYKFIRP 279


>At4g20930.1 68417.m03033 3-hydroxyisobutyrate dehydrogenase,
           putative similar to SP|P29266 3-hydroxyisobutyrate
           dehydrogenase, mitochondrial precursor (EC 1.1.1.31)
           {Rattus norvegicus}; contains Pfam profile PF03446: NAD
           binding domain of 6-phosphogluconate dehydrogenase
          Length = 347

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 297 VAKEMISCGYKFREHELNQDVLEHLTKEGI 386
           +   +I  GYK   H++N+DV++  T+ G+
Sbjct: 52  MVNNLIRAGYKVTVHDINRDVMKMFTEMGV 81


>At5g10760.1 68418.m01250 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 464

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 372 SNVQGRLGLIHVHGICNHMIS 310
           SN +  L ++H+HG C+H+ S
Sbjct: 59  SNTKSSLRVVHMHGACSHLSS 79


>At1g72140.1 68414.m08341 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 555

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 6   AGIRHEGQITQDTCELLPNEDTR 74
           A  R+  Q   DTC LLPNE T+
Sbjct: 271 AAARNRRQTPSDTCLLLPNESTK 293


>At4g20850.1 68417.m03025 subtilase family protein contains
           similarity to Tripeptidyl-peptidase II (EC 3.4.14.10)
           (TPP-II) (Tripeptidyl aminopeptidase)
           (Swiss-Prot:P29144) [Homo sapiens]
          Length = 1380

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -2

Query: 250 SGQTPP*LSGK*SRADVLVKRCDVITVEIDPRFHDVVQEWLKNAVSFVE 104
           SG+T P   G   R     ++    T+++DP+FH+     LK  V F E
Sbjct: 640 SGKTIPTSRGIYLREGTACRQSTEWTIQVDPKFHEGASN-LKELVPFEE 687


>At4g20140.1 68417.m02947 leucine-rich repeat transmembrane protein
            kinase, putative Cf-2.2, Lycopersicon pimpinellifolium,
            PIR:T10515
          Length = 1249

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +3

Query: 165  ISTVMTSHRFTSTSARDYLPESYGGVWPDYSYTI 266
            ++ V+T +  T+T +  +   SYG + P+Y+Y++
Sbjct: 1105 LAKVLTENCDTNTDSNTWFACSYGYIAPEYAYSL 1138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,206,946
Number of Sequences: 28952
Number of extensions: 239271
Number of successful extensions: 563
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)