Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0224
         (606 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   4.6  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   6.1  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   6.1  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   8.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   8.1  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 495 CVVTYPSLVRSPAVLLF 445
           C   YP L R PA+L+F
Sbjct: 176 CQGGYPRLQRCPAMLVF 192


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 464 DLTSDGYVTTQQLAQAWKQRFPGLLTPNT 550
           DLT+   + +  + +   +RFPG L  NT
Sbjct: 277 DLTTHVMLLSDWMHEDATERFPGRLAVNT 305


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 464 DLTSDGYVTTQQLAQAWKQRFPGLLTPNT 550
           DLT+   + +  + +   +RFPG L  NT
Sbjct: 277 DLTTHVMLLSDWMHEDATERFPGRLAVNT 305


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +2

Query: 299 EANETAELQQLVD 337
           + +ET++LQQLVD
Sbjct: 113 KTSETSKLQQLVD 125


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = -1

Query: 249 HPGTSCALAFGMPRLEKMYAVFVPNSKYG 163
           HP T  +  +  P     Y  + PN K G
Sbjct: 126 HPYTVISNGYSSPMSSGSYDPYSPNGKIG 154


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,854
Number of Sequences: 336
Number of extensions: 2914
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)