Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0224
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    33   0.025
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    30   0.30 
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    29   0.53 
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   1.6  
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc...    27   1.6  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    27   2.1  
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    25   8.6  

>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 33.5 bits (73), Expect = 0.025
 Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 4/117 (3%)
 Frame = +2

Query: 248 CQPVAFWLLSRHGSHNPEANETAELQQLVDLKNNIVTNYKNG----NFRNTNHRICTADF 415
           C+     LL RHGS NP  + TA         NN      NG    NF    + +C    
Sbjct: 58  CEIQQVHLLQRHGSRNPTGDVTATDVYSSQYLNNFQEKLLNGSIPVNFSYPENPLC---- 113

Query: 416 NLLERWNWKQNSSTAGDLTSDGYVTTQQLAQAWKQRFPGLLTPNTYNYLFKFVEEPR 586
             +++W    ++  A  L+S G +    L +   QR+  L   ++Y Y     E+ R
Sbjct: 114 -FIKQWTPVIDAENADQLSSRGRLELFDLGRQLYQRYYKLF--DSYVYDINTAEQER 167


>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
 Frame = +2

Query: 269 LLSRHGSHNPEANETA---ELQQLVDLKNNIVTNYKNGNFRNTNHRICTADFNLLERWNW 439
           LL RHGS NP  ++TA      Q +D+  N      NG+    N          ++ W  
Sbjct: 65  LLQRHGSRNPTGDDTATDVSSAQYIDIFQN---KLLNGSI-PVNFSYPENPLYFVKHWTP 120

Query: 440 KQNSSTAGDLTSDGYVTTQQLAQAWKQRFPGLLTPNTYN 556
              +  A  L+S G +    L +   +R+  L   + Y+
Sbjct: 121 VIKAENADQLSSSGRIELFDLGRQVFERYYELFDTDVYD 159


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 23/95 (24%), Positives = 39/95 (41%)
 Frame = +2

Query: 272 LSRHGSHNPEANETAELQQLVDLKNNIVTNYKNGNFRNTNHRICTADFNLLERWNWKQNS 451
           L RHGS NP     A     V +  N      NG+    ++ +     + +  W     +
Sbjct: 66  LQRHGSRNPTGGNAA--FDAVGIA-NFQQRLLNGSV-PIDYSVSGNPLSFVPTWTPVIEA 121

Query: 452 STAGDLTSDGYVTTQQLAQAWKQRFPGLLTPNTYN 556
           + A  L+S G V    + + + +R+  L   +TYN
Sbjct: 122 ANADALSSSGRVELFDMGRQFYERYHELFNASTYN 156


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 131 ADEICLTSEEDPYLLFGTKTAYIFSNRGIPNAKAHEVPGCQPVA 262
           A  I    E+  Y+L  T   Y++  + +P++ A +V GC  +A
Sbjct: 483 APSIYYGDEQGFYVLDNTANNYLYGRQAMPSSIAWKVHGCYALA 526


>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 284 GSHNPEANETAELQQLVDLKNNIVTNYKNGNFRNTN 391
           G   P+ +  A   QL +L  N + N  NGN  N N
Sbjct: 275 GGGMPDLSSLANNPQLQNLARNFMNNNNNGNTDNNN 310


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 529 WTIDAEHLQLFVQIR 573
           WTID +H+Q FV +R
Sbjct: 155 WTIDPDHMQNFVSVR 169


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 95  AFILLMAALCARADEICLTSEEDPYLLFGTKTA 193
           AFI+++  LC R     LT     Y+ FG K A
Sbjct: 85  AFIIIIVELCERFAYYGLTVPFQNYMQFGPKDA 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,446,636
Number of Sequences: 5004
Number of extensions: 47877
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)