Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0224
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0463 + 34121421-34121560,34121728-34121812,34122129-341224...    36   0.025
09_01_0144 - 2158924-2158962,2159180-2159315,2159393-2159499,215...    29   2.9  
02_05_1094 + 34060262-34060385,34061256-34061428,34061505-340616...    29   2.9  
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732...    28   5.0  

>03_06_0463 +
           34121421-34121560,34121728-34121812,34122129-34122428,
           34123194-34123352,34123852-34123992,34124078-34124134,
           34124534-34124672,34124954-34125058,34125159-34125376,
           34125980-34126021,34126136-34126309
          Length = 519

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 4/121 (3%)
 Frame = +2

Query: 248 CQPVAFWLLSRHGSHNPEANETAELQQLVDLKNNIVTNYKNGNFRNTNHRICTADFNLLE 427
           C+ +   L++RHG+  P      EL +L      ++   K G   ++  +I +     ++
Sbjct: 67  CRVIHLNLVARHGTRAPTKKRIKELDRLAVRLKALIDEAKQGPESDSLKKIPS----WMK 122

Query: 428 RWN--WKQNSSTAGDLTSDGYVTTQQLAQAWKQRFPGLLTPNTYN--YLFKFVEEPRSSN 595
            W   WK      G+L S+G      LA   K+RF GL     +   Y  +  + PR+S 
Sbjct: 123 GWESPWKGRVK-GGELVSEGEEELYNLAIRVKERFQGLFDEEYHPDVYSIRATQVPRASA 181

Query: 596 S 598
           S
Sbjct: 182 S 182


>09_01_0144 -
           2158924-2158962,2159180-2159315,2159393-2159499,
           2159594-2160055,2162755-2162836,2164222-2164346,
           2164555-2164623,2164935-2165056,2165823-2165856
          Length = 391

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -1

Query: 252 WHPGTSCALAFGMPRLEKMYAVFVPNSKYGSSSDVRQISSARA--HKAAISRMKAHRIF 82
           W P + CA+A    R ++++  F PN   G+   V ++   ++  H+ ++ R++   IF
Sbjct: 329 WEPCSMCAMALVHQRFKRIFYAF-PNPITGALGSVYRLHGEKSLNHRYSVFRVRVADIF 386


>02_05_1094 +
           34060262-34060385,34061256-34061428,34061505-34061686,
           34061789-34062073,34062160-34062218,34062349-34062385,
           34062485-34062556,34063613-34063937,34064027-34064410
          Length = 546

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 326 QLVDLKNNIVTNYKNGNF 379
           QLV+L N ++TN  NGNF
Sbjct: 358 QLVNLVNQVITNVSNGNF 375


>08_02_0749 -
           20769224-20770535,20770649-20771510,20771622-20773263,
           20773357-20773701,20773858-20773952,20774218-20774344,
           20774430-20774435
          Length = 1462

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +2

Query: 323 QQLVDLKNNIVTNYKNGNFRNTNH--RICTADFNLLERWNWKQNSSTAGDLTSDG 481
           + + D K  + T     N   + H  + C+A F+ L   N   +SSTA D  S G
Sbjct: 346 ESVPDTKPVVATRLNCENLVESTHTQKDCSASFSALSSANKADDSSTASDTKSSG 400


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,931,677
Number of Sequences: 37544
Number of extensions: 349468
Number of successful extensions: 1016
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)