Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0224
(606 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31215| Best HMM Match : Acid_phosphat_A (HMM E-Value=2.6e-26) 37 0.011
SB_38343| Best HMM Match : Acid_phosphat_A (HMM E-Value=2.4e-40) 36 0.034
SB_37510| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_6164| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03) 29 2.2
SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74) 29 2.9
SB_46133| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_20374| Best HMM Match : zf-U1 (HMM E-Value=1.7) 28 5.1
SB_11172| Best HMM Match : LTXXQ (HMM E-Value=1.9) 28 5.1
SB_55980| Best HMM Match : rve (HMM E-Value=3.8e-23) 28 6.7
SB_46200| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_25409| Best HMM Match : PSD1 (HMM E-Value=7.2) 28 6.7
>SB_31215| Best HMM Match : Acid_phosphat_A (HMM E-Value=2.6e-26)
Length = 448
Score = 37.1 bits (82), Expect = 0.011
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Frame = +2
Query: 101 ILLMAALCARADEICLTSEEDPYLLFGTKTAYIFSNRGIPNAKAHEVPGCQPVAFWLLSR 280
+L ++ L + L+ E Y F +KT Y N K E GC V L++R
Sbjct: 1 MLAVSTLILVLSFVLLSQGEGHYRNFASKTRYYEPNLEEDIKKERE-GGCSAVHMSLVAR 59
Query: 281 HGSHNPEANETAELQQLVDLKNNIVTNY--KNGN 376
HG+ NP + ++Q+ + + + + + K GN
Sbjct: 60 HGTRNPSKRDVKKIQRTTEAIDQLFSGHPVKIGN 93
>SB_38343| Best HMM Match : Acid_phosphat_A (HMM E-Value=2.4e-40)
Length = 456
Score = 35.5 bits (78), Expect = 0.034
Identities = 31/133 (23%), Positives = 61/133 (45%)
Frame = +2
Query: 176 FGTKTAYIFSNRGIPNAKAHEVPGCQPVAFWLLSRHGSHNPEANETAELQQLVDLKNNIV 355
+G+KT Y N ++ PGC+PV +L+RHG P +++ + K N++
Sbjct: 20 YGSKTPYNHGNL----SEVETPPGCKPVHINMLARHGERYPSSDDLKAFAAFLQ-KLNVL 74
Query: 356 TNYKNGNFRNTNHRICTADFNLLERWNWKQNSSTAGDLTSDGYVTTQQLAQAWKQRFPGL 535
N G + ++ T + L + K +S +L+ G +A+ + R+P +
Sbjct: 75 HN-TTGPY---IYKALTLPWTLPASYKSKLSS----ELSVAGERQHYGIARRYHARYPSV 126
Query: 536 LTPNTYNYLFKFV 574
+ +N ++FV
Sbjct: 127 FSKQYWNADYEFV 139
>SB_37510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = +2
Query: 275 SRHGSHNPEANETAELQQLVDLKNNIVTNYKNGNFRNTNHRICTADFNLLERWNWKQNSS 454
S + ++N +N + + NN T N RN N+ I T++ N +N +N +
Sbjct: 65 SNYTTNNNHSNNNYTIDNKDNSSNNNYTINNKNNSRNNNYTISTSNNNYTTNYNKSKNFT 124
Query: 455 TAGDLTSDGYVTT 493
T T+ TT
Sbjct: 125 TRTKTTTSETTTT 137
>SB_6164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 465
Score = 31.1 bits (67), Expect = 0.72
Identities = 29/79 (36%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +2
Query: 299 EANETAELQQ--LVDLKNNIVTNY-KNGNFRNTNHRICTADFNLLERWNWKQNSSTAGDL 469
E NET ++Q L DL NNI + KN N N RI N R + N+S +
Sbjct: 355 EVNETRKIQHISLGDLCNNISGSIIKNKN----NSRINNNSSNNNRRNISRNNNSINNTI 410
Query: 470 TSDGYVTTQQLAQAWKQRF 526
T+ QQL +KQRF
Sbjct: 411 TATEQTEKQQLIVLFKQRF 429
>SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)
Length = 1832
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -1
Query: 216 MPRLEKMYAVFVPNSKYGSSSDVRQISSARAHKAAISR-MKAHRIFSR 76
M +L+ +YA FV S S+ + + A +H+A + R M+ H++ R
Sbjct: 695 MEQLQTLYATFVQQSAAQSARALEKAEEASSHEARLRRYMQEHKLQPR 742
>SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74)
Length = 483
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 537 NSPGNRCFQACANCCVVTYPSLVRSPAVL 451
+S G +C CA CC V P ++ P ++
Sbjct: 105 DSKGGKCSDECAACCPVCCPGVICRPVMV 133
>SB_46133| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 264
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Frame = +2
Query: 386 TNHRICTADFNLLERWNWKQNSSTAGD-LTSDGYVTTQQLAQ-----AWKQRFPG 532
T H + T D + W WK T+ ++++ + T+Q + A++ FPG
Sbjct: 176 TEHGMATIDGQTCQSWLWKSGGHTSDQPISTENFYTSQSTSATFYPVAYRAEFPG 230
>SB_20374| Best HMM Match : zf-U1 (HMM E-Value=1.7)
Length = 783
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 248 CQPVAFWLLSRHGSHNPEANETAELQQLVDLKN 346
C+PVA +LLS G H + Q+ VD N
Sbjct: 68 CKPVASYLLSGRGKHGKGRSHRQTPQEYVDTHN 100
>SB_11172| Best HMM Match : LTXXQ (HMM E-Value=1.9)
Length = 142
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 126 LEPTRSALRLKRTHICYSERRPRTSSPIVASQTL 227
L P RS LR+ S+RR R S+P++A+ +
Sbjct: 21 LPPRRSTLRVSHLRDTPSQRRARNSAPMMANSVV 54
>SB_55980| Best HMM Match : rve (HMM E-Value=3.8e-23)
Length = 1268
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 502 GTGLEAAVPWTIDAEHLQLFVQIRRRT 582
G E + WT+DA+H + +IR T
Sbjct: 836 GDSTEKIIKWTVDADHAVVLKRIREET 862
>SB_46200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 165 HI-CYSERRPRTSSPIVASQTLRHMKYQDANP 257
HI CY R R+SSP H +Y ++NP
Sbjct: 2 HITCYLPREIRSSSPSPGRSANPHCRYNESNP 33
>SB_25409| Best HMM Match : PSD1 (HMM E-Value=7.2)
Length = 889
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 213 PRLEKMYAVFVPNSKYGSSSDV 148
P +KM+ V+V N++YG SD+
Sbjct: 814 PGYDKMHTVYVWNAQYGDGSDI 835
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,287,365
Number of Sequences: 59808
Number of extensions: 399532
Number of successful extensions: 1250
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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