Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0223
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   3.1  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    26   5.3  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    26   5.3  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    26   5.3  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    26   5.3  
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc...    26   5.3  
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    25   7.1  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 349  HDMDSTNISPVCEANLNPISIPHNSA 272
            +D D+  I  + ++++ P+  PHNSA
Sbjct: 930  NDRDNEGIHDILQSDMEPVLPPHNSA 955


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = +1

Query: 361 IQIYLLAAPPSKIVTALFRIHLYLLNGPLLAFLFPETASRKIFVEAALYWIQHGMMCIIP 540
           I IY+     S IVT  F +  +L+  P   FLFP T     FV+A ++ +   ++ +  
Sbjct: 27  ISIYIKVFGRSSIVT-FFLLCFHLV--PNALFLFPWTIITTSFVDANVFTLLSSILILSV 83

Query: 541 Y 543
           Y
Sbjct: 84  Y 84


>SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1163

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 509  QYKAASTKIFLEAVSGNKNARRGPFNKYK 423
            Q  A   + +LEAV+G ++ RRG  N+ K
Sbjct: 1094 QQHAEVNRTYLEAVAGKESFRRGLNNRVK 1122


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = +2

Query: 47  CSNG--RYSGANKAVPRSVGPE 106
           C+NG  R  GA  AV RS+GPE
Sbjct: 134 CTNGMVRGGGAYYAVSRSIGPE 155


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +1

Query: 388 PSKIV---TALFRIHLYLLNGPLLAFLFPETASRKIFVEAALYWIQHGMMCI 534
           PS+++   TAL  I   + N  L  + FP T    +++   LYWI   + CI
Sbjct: 98  PSEVLFMPTALLAIATSISN--LYPYAFPYTGEWMVWLIRILYWIFVAVACI 147


>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 129 WGVKKKAHSGPTLLGTALFAPL 64
           W VKK A + P L+ T   APL
Sbjct: 338 WSVKKLAWTSPALVLTGFLAPL 359


>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 547 LLRLGGVYNIEPIRDFNWSVFS 612
           LL+L G  + + ++DFNW V S
Sbjct: 158 LLQLFGAASQDALQDFNWEVLS 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,866
Number of Sequences: 5004
Number of extensions: 61490
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)