Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0223
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27730| Best HMM Match : DUF755 (HMM E-Value=3.9)                    33   0.15 
SB_10356| Best HMM Match : WD40 (HMM E-Value=6e-10)                    33   0.26 
SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_58379| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)                    29   4.3  
SB_13204| Best HMM Match : GRP (HMM E-Value=0.0017)                    27   9.9  

>SB_27730| Best HMM Match : DUF755 (HMM E-Value=3.9)
          Length = 262

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = +3

Query: 438 WTSSCIFISRNSFQEDFCGSCLVLDTTWYDVYYTLLFIE 554
           W+ +C F S  SF  DF  SC VL TT+Y  +  L+F++
Sbjct: 42  WSQTCAFSSHFSF--DFTSSCEVLGTTFY-AFVMLVFLK 77


>SB_10356| Best HMM Match : WD40 (HMM E-Value=6e-10)
          Length = 283

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 285 GMEIGFKFASHTGDIFVESMSCNNINTNLFTSCST 389
           G  + F FA H G +F  S++C+  + NLF +C T
Sbjct: 129 GSPVTFAFAPHVGPVF--SVNCSPYHRNLFLTCGT 161


>SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 724

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 322 VIYLLNPCHVTTLIQIYLLAAPP 390
           ++YLL PC +T+L+ I L   PP
Sbjct: 201 IVYLLAPCLLTSLLAILLFTLPP 223


>SB_58379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 5   LTRWRRSSTRML*KCSNGRYSGANKAVPRSVGPE 106
           LTRW+R     +  CS  +YS A+++ P    P+
Sbjct: 8   LTRWQRLKQVFVFPCSRRKYSSASQSAPEPSEPD 41


>SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1668

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 93   LLGTALFAPLYRPFEHFYNILVLERRH 13
            + G   FAPL   F  +Y+IL+  RRH
Sbjct: 1499 IFGACFFAPLLVMFYSYYHILLAARRH 1525


>SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)
          Length = 454

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
 Frame = -3

Query: 114 KAHSGPTLLGTALFAPLY-RP---FEHFYNIL 31
           ++HSGP+   T  F PLY  P   +  FYNIL
Sbjct: 46  RSHSGPSTFDTTFFVPLYLLPSLLYVPFYNIL 77


>SB_13204| Best HMM Match : GRP (HMM E-Value=0.0017)
          Length = 723

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = -2

Query: 190 VFTNK*THIRNTIIVSIIFLLG 125
           VF N+ T +R T++++++FLLG
Sbjct: 32  VFVNRFTKMRWTLLIALVFLLG 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,039,448
Number of Sequences: 59808
Number of extensions: 424251
Number of successful extensions: 688
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)