Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0223
         (644 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23200.1 68417.m03346 protein kinase family protein contains ...    30   1.5  
At1g19690.1 68414.m02455 expressed protein similar to (SP:P76370...    29   3.5  
At1g36230.1 68414.m04504 hypothetical protein                          27   8.1  

>At4g23200.1 68417.m03346 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 648

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 493 EAALYWIQHGMMCIIPYYLLRLGGVYNIEPIRDFNWSVFSYCLN 624
           E AL WI +  +C+I Y      G + +EP R+F  S+  Y  N
Sbjct: 103 ENALIWIANRTICMIRYSDTSFVGSFELEPHREF-LSIHGYKTN 145


>At1g19690.1 68414.m02455 expressed protein similar to (SP:P76370)
           Protein yeeZ precursor. {Escherichia coli O157:H7}
          Length = 352

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 463 PETASRKIFVEAALYWIQHGMMCIIPYYLLRLGGVY 570
           P+T S K+ + A   W+  G    +   +LRLGG+Y
Sbjct: 178 PKTQSAKVRLAAEQGWLSLGRDLGVSTQILRLGGIY 213


>At1g36230.1 68414.m04504 hypothetical protein
          Length = 376

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 303 KFASHTGDIFVESMSCNNINTNLFTSCS 386
           KFA+   D+  E +SC+N N N   S S
Sbjct: 20  KFANSASDLDAEDLSCSNSNCNRDVSVS 47


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,233,739
Number of Sequences: 28952
Number of extensions: 296963
Number of successful extensions: 647
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)