Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0222
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    27   1.9  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    25   5.8  
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    25   7.6  

>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 129 LNPRTSVIDFTTTXPWQYTSSYALNKYPHISHTPNETIP 13
           L+P    +DF+    +  + SY   + P I H   ET+P
Sbjct: 231 LHPYVKFVDFSPNEKYLVSWSYEPVRLPPIGHPARETMP 269


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 117 TSVIDFTTTXPWQYTSSYALNKYPHISHTPNETIPSCRI 1
           T V+  + + P Q+TSSY L  YP  +     T  +C++
Sbjct: 446 TGVLSSSDSVP-QWTSSYNLPGYPPDATAMGSTSSACKV 483


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = -3

Query: 311 YLAFNLSLYSKRNKAQIYTFKGLVEIKFKS----SASFISDVFVCTELNEFTVRFSLA 150
           ++ FN++    R KAQ+Y F+ L      +     +  ISD+F   E  +     SLA
Sbjct: 122 FIVFNMACGLARTKAQMYIFRFLAGFGSATPMGLGSGTISDLFTPDERGKAVAVMSLA 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,044,486
Number of Sequences: 5004
Number of extensions: 36541
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)