Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0222
         (562 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0305 - 16644276-16644290,16644611-16645258,16646764-166468...    31   0.83 
03_01_0650 - 4762354-4763247                                           29   3.4  

>10_08_0305 -
           16644276-16644290,16644611-16645258,16646764-16646865,
           16646980-16647111,16647574-16648242
          Length = 521

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
 Frame = -3

Query: 308 LAFNLSLYSKRNKAQIYTFKGLVE--IKFKSSASFISDVFVCTELNE-FTVRFS-----L 153
           L F + LYSKRN   +  FK      I+F  S   I+   +C   NE + VRFS     L
Sbjct: 229 LIFQILLYSKRNDHNLRYFKTNDNNVIRFFFSQEGITIQILCGHNNEVWFVRFSNDGNYL 288

Query: 152 ATSANDLTSI 123
           A+S++D T+I
Sbjct: 289 ASSSSDCTAI 298


>03_01_0650 - 4762354-4763247
          Length = 297

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 135 SNLNPRTSVIDFTTTXPWQYTSSYALNKYPHI 40
           S++ P   ++DF+   PW  + S+ L+KYP +
Sbjct: 258 SDVVPEMQLLDFSEA-PWDESESFLLHKYPSL 288


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,789,533
Number of Sequences: 37544
Number of extensions: 191015
Number of successful extensions: 342
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)