Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0222
         (562 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30489| Best HMM Match : HEAT (HMM E-Value=9.2e-17)                  28   6.0  
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     28   6.0  
SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_11888| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_5704| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.9  

>SB_30489| Best HMM Match : HEAT (HMM E-Value=9.2e-17)
          Length = 722

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 130 VRSLAEVASEKRTVNSFNSVQTNTSLINEADDLNF 234
           +  L E+ +++ T    + ++T T+L+N  DD+NF
Sbjct: 40  IPELVELTNDEETSVRLSGMETITNLLNLLDDVNF 74


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +1

Query: 310 Y*SRHSFCEAYFCVTQSRLYHLCRFRHTYHY 402
           Y   H  C  +      R +H C +RH YHY
Sbjct: 17  YRHHHYCCYCHHRYCYYRHHHYCWYRHHYHY 47


>SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 536 CQQLICLRFILTCAKCIMYV 477
           C  L+C+RF+  C   ++YV
Sbjct: 194 CLSLLCVRFVCPCCMSVLYV 213


>SB_11888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 787

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = -3

Query: 326 ECLD*YLAFNLSLYSKRNKAQIYTFKGLVEIKFKSSASFISDV 198
           +CLD    F++++ S +N    +  + LV  K+ +S  F+S++
Sbjct: 571 KCLDVLSCFSVNVASSKNSESKFWCELLVTDKYNASVKFLSNI 613


>SB_5704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2061

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -3

Query: 326  ECLD*YLAFNLSLYSKRNKAQIYTFKGLVEIKFKSSASFI 207
            EC+  +L   LS  ++RN+A     + LV ++F +S SF+
Sbjct: 1767 ECITQFLREELSRDTRRNQALAPIVQVLVALRFYASGSFL 1806


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,767,131
Number of Sequences: 59808
Number of extensions: 254082
Number of successful extensions: 540
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)