Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0222
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82075-2|CAB60333.1|  328|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z83218-3|CAB05688.1|  330|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>Z82075-2|CAB60333.1|  328|Caenorhabditis elegans Hypothetical
           protein W07A8.5 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = +1

Query: 34  VRNMRVFV*CVTRCILPRXGSCKINYTGSWIEVRSLAEVASEKRTVNSFNS 186
           V +  + + C+T  ++P    C +N+  S +E ++  + A +K  V  F +
Sbjct: 130 VYSFGILIFCLTLLLIPYFSDCSVNFLASSLEFQT--DCAPDKHPVTRFTN 178


>Z83218-3|CAB05688.1|  330|Caenorhabditis elegans Hypothetical
           protein C31A11.6 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +1

Query: 49  VFV*CVTRCILPRXGSCKINYTGSWIEVRSLAEVASEKRTVNSFNSV 189
           + + C T  ++PR   C +N+  S +    L   A E+  V  F ++
Sbjct: 135 ILILCFTLLLIPRLSYCPVNFLASTLVF--LTACAPERHPVTKFTNI 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,138,945
Number of Sequences: 27780
Number of extensions: 198920
Number of successful extensions: 404
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)