Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0221
         (544 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   5.3  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   7.0  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   9.2  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 38  RSVTVKDVEQDKIGGNCRCSL 100
           RS+T   V Q K G NC   +
Sbjct: 214 RSITKNAVYQCKYGNNCEIDM 234


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 11/44 (25%), Positives = 18/44 (40%)
 Frame = -2

Query: 315 CRNVKV*LHYVCAHRRSW*QS*LQQVSECKYDEGWQHNAHRTNQ 184
           C N++      C+    W    L +  +C Y EGW   +   +Q
Sbjct: 200 CDNLQYSFDNQCSGTIDWA---LPKQEDCFYQEGWNGQSFDVSQ 240


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 134 VLRYLDFARFF*VSSDSS 81
           +LRY D  + F V +DSS
Sbjct: 591 LLRYPDLNKIFYVQTDSS 608


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,985
Number of Sequences: 336
Number of extensions: 2443
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13306679
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)