Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0221
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...   157   7e-39
11_01_0645 + 5185341-5185568,5185773-5185823                           27   7.3  
02_01_0073 - 509377-509425,510200-510270,510420-510539,510684-51...    27   9.7  
01_06_1208 + 35424241-35424370,35424415-35424728,35424782-354249...    27   9.7  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score =  157 bits (380), Expect = 7e-39
 Identities = 67/126 (53%), Positives = 95/126 (75%)
 Frame = +3

Query: 60  LNKTRLVGTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRS 239
           +N    V   +AHLK++GK+++PE +D+VKTARFKEL PYDPDW+Y R A+I R IY+R 
Sbjct: 12  VNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKIYLRQ 71

Query: 240 PVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGR 419
            +GV    KI+GGR+RNG  P HFC+SSG+I+R  LQ L+ + +++    GGR++T+QGR
Sbjct: 72  GIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGR 131

Query: 420 RDLDRI 437
           RDLD++
Sbjct: 132 RDLDQV 137


>11_01_0645 + 5185341-5185568,5185773-5185823
          Length = 92

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 225 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARK 341
           ++ +SP  +  +   + GR+R G  P    R +G IA +
Sbjct: 18  VHCKSPAALLGIESPYSGRRRVGARPRGGSRQAGQIAER 56


>02_01_0073 -
           509377-509425,510200-510270,510420-510539,510684-510769,
           510843-510915,510996-511718,513752-514081,514124-514210,
           514494-515250,515336-515399,515477-515609,515702-515801,
           515952-516088,516195-516341,516428-516478,517083-517148
          Length = 997

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 32  KMRSVTVKDVEQDKIGGNCRCSLKKNGQSQGT*AHGSCKDSS 157
           K+ SV  K+ EQ+  G  C C  +    +  T    +C++ S
Sbjct: 366 KVNSVVNKETEQELGGSRCSCFTESGEVNNETSRKSACREDS 407


>01_06_1208 +
           35424241-35424370,35424415-35424728,35424782-35424967,
           35425361-35425523,35425601-35425787,35425875-35426016
          Length = 373

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 393 HRPELSQQASMPPTIAKPCVQYCLMTCRN 307
           H  +  +  + P TIA+  +QYCL TC N
Sbjct: 116 HPTQDPEATNSPFTIAQLQLQYCLHTCTN 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,317,221
Number of Sequences: 37544
Number of extensions: 292988
Number of successful extensions: 754
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)