Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0221
         (544 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)          99   1e-21
SB_52196| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_9755| Best HMM Match : Sushi (HMM E-Value=0)                        29   3.2  
SB_38293| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_36204| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_15869| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)
          Length = 92

 Score =   99 bits (238), Expect = 1e-21
 Identities = 52/110 (47%), Positives = 67/110 (60%)
 Frame = +3

Query: 108 TGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKR 287
           +G +K+P+ +DLVKT +FKELAPYDPDW+Y+R                        GRK 
Sbjct: 2   SGNLKIPDWVDLVKTGKFKELAPYDPDWYYIRA-----------------------GRKN 38

Query: 288 NGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 437
            G  PSHF   S S+AR  L+ LE +KLVEK   GGR +T+QG+RD+DRI
Sbjct: 39  RGSAPSHFEVGSASVARSVLKGLEQIKLVEKASTGGRNITSQGQRDMDRI 88


>SB_52196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 47  TVKDVEQDKIGGNCRCSLKKNGQSQGT*AHGSCKDSSLQRAGS 175
           T  D EQD   G C CS KK+G+     +  S   SS   + S
Sbjct: 270 TYADDEQDCCQGKCNCSHKKHGKKYPKDSSSSSSSSSSSSSSS 312


>SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +3

Query: 186 DWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEAL 365
           D +YVR A +     I +  G   + +I   R+R  VTPS    S G    + L  L+ +
Sbjct: 57  DQWYVRDACVSPSENISTNYGSPKLPRIVETRQRGDVTPSPLVLSRGISRERLLTKLDRM 116

Query: 366 KL 371
           +L
Sbjct: 117 QL 118


>SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = +2

Query: 236 LTCWSQDC---HQDLRWAQT*WSYTFTFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 397
           ++C ++DC   +  L   +T  S T TF   ++  C +GF ++G      +S+G+WS
Sbjct: 262 VSCKARDCGPLNTPLNGTKT-GSLT-TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 316



 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 305 TFLQVIRQYCTQGFAIVGG-IEAC*ESSGRWS 397
           TF   +   C +GF ++G  + +C +SSG+WS
Sbjct: 112 TFPNKVTFSCDEGFILIGSPLRSC-QSSGKWS 142


>SB_9755| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1351

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 305 TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 397
           TF   ++  C +GF ++G      +S+G+WS
Sbjct: 21  TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 51


>SB_38293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1732

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -1

Query: 139 SMCSGTLTLPVFFK*AATVPTNLVLFNILYCDGTHLALCCLVPNS 5
           S  SGT+ L V +   AT+  N  L     C G H+AL C   +S
Sbjct: 217 SEASGTVCLTVQYAPNATISVNTTLV----CQGDHVALTCTAGDS 257


>SB_36204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 199 CVVLPSFVIFTFAHLLESRLSPRSSVG 279
           C  LP  V+F   H++   L P SSVG
Sbjct: 26  CGTLPDLVMFRTGHIMRRALIPCSSVG 52


>SB_15869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1420

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 20   ATQGKMRSVTVKDVEQDKIGGNCRCSLKKN 109
            AT   +    VK++E+D +G   +C L++N
Sbjct: 1177 ATLDNLGRALVKNLEKDSLGAETQCKLQRN 1206


>SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 305  TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWSHSHHT 412
            T+   I   C +G+A++G      +++G WS S+ T
Sbjct: 913  TYSSTINITCDEGYALIGPESRVCQANGTWSGSNVT 948


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,491,907
Number of Sequences: 59808
Number of extensions: 349506
Number of successful extensions: 803
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)