Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0221
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...   144   5e-35
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...   144   5e-35
U29382-2|AAF99999.1|  147|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AF067608-2|AAC17653.1|  225|Caenorhabditis elegans Hypothetical ...    27   6.6  
Z83217-2|CAB05680.2|  319|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score =  144 bits (348), Expect = 5e-35
 Identities = 70/119 (58%), Positives = 86/119 (72%), Gaps = 1/119 (0%)
 Frame = +3

Query: 84  TVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVT 263
           ++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ RH+Y R P G+    
Sbjct: 18  SIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLARHLYFR-PAGIGAFK 76

Query: 264 KIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRRDLDRI 437
           K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG GRIL+ QGR+DLDRI
Sbjct: 77  KVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRKDLDRI 135


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score =  144 bits (348), Expect = 5e-35
 Identities = 70/119 (58%), Positives = 86/119 (72%), Gaps = 1/119 (0%)
 Frame = +3

Query: 84  TVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVT 263
           ++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ RH+Y R P G+    
Sbjct: 18  SIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLARHLYFR-PAGIGAFK 76

Query: 264 KIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRRDLDRI 437
           K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG GRIL+ QGR+DLDRI
Sbjct: 77  KVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRKDLDRI 135


>U29382-2|AAF99999.1|  147|Caenorhabditis elegans Hypothetical
          protein R03H10.4 protein.
          Length = 147

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 73 LVLFNILYCDGTHLALCCLVPN 8
          +VLF  +YC+G H+ + C  P+
Sbjct: 8  VVLFGSIYCEGCHVQIRCPCPD 29


>AF067608-2|AAC17653.1|  225|Caenorhabditis elegans Hypothetical
           protein B0511.5 protein.
          Length = 225

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 94  AATVPTNLVLFNILYCDGTHLALCCLVPNSC 2
           A  V  N  L ++  CDGT+L L C+  + C
Sbjct: 121 AEIVHVNAPLEHVWTCDGTNLDLFCMTVHDC 151


>Z83217-2|CAB05680.2|  319|Caenorhabditis elegans Hypothetical
           protein C10C6.3 protein.
          Length = 319

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = +3

Query: 231 IRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRIL 404
           I S +  K  T ++ G  R G  P      SGS  +K   +  A+K  EK +D GR L
Sbjct: 141 IESDLKEKPDTNVYTG-SREGYVPPPAKEGSGSGGKKKDMNNVAVKPDEKKKDSGRKL 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,878,580
Number of Sequences: 27780
Number of extensions: 246674
Number of successful extensions: 653
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)