Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0219
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    26   4.2  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    25   5.5  
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    25   7.3  
SPAP11E10.01 |||ornithine cyclodeaminase family |Schizosaccharom...    25   9.6  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   9.6  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   9.6  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   9.6  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    25   9.6  

>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
 Frame = -3

Query: 228 VLNISLRIC------LHSFSAVSLSRSKTTPRIYA 142
           +LN+SLRIC      LH++   SL RS   P + A
Sbjct: 431 ILNLSLRICFALRFILHNYKDFSLPRSLPRPFLLA 465


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 264 FNNLVDYLKGGAPEMGIEEAEPIVIDELSIALGAGPD 374
           F  LV+Y  GG  ++ +E+   +  D  ++ L + PD
Sbjct: 9   FGELVEYFSGGTRQVDVEKL-GVCTDNSNVELSSCPD 44


>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 276 VDYLKGGAPEMGIEEAEPIVIDEL 347
           +DY+    P +G   AEPI +++L
Sbjct: 355 IDYVVAPLPGLGPSTAEPIAVEDL 378


>SPAP11E10.01 |||ornithine cyclodeaminase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 330

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 326 AHCDRRTVYSPRSWSRRLQS 385
           AHC  R + S R W+ R +S
Sbjct: 150 AHCSVRPIRSVRIWNHRFES 169


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 221 TFPSEYVCIRFQRYHCRDQKQRHEFMH 141
           T    +VCI  +R+  RD  ++HE +H
Sbjct: 447 TSEKPFVCICGKRFSRRDNLRQHERLH 473


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 222  SRQDPNVDACLLRSFNNLVDYLKGGAPEMGIEEAEPIV 335
            +R+DP  D   L  F+ ++D+ K   PE      EP +
Sbjct: 1274 ARKDPEGDLLELACFSMMIDFFK-VLPEFSSSYVEPTI 1310


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 141 MHKFVALFLIATVIPLKTN 197
           MH F+  F+    IPLKTN
Sbjct: 319 MHHFIPSFISLLKIPLKTN 337


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 327 AQPLRCPSQELLPSSS 280
           AQPL  PSQ+LL S S
Sbjct: 353 AQPLELPSQQLLRSQS 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,166,950
Number of Sequences: 5004
Number of extensions: 42624
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)