Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0219
(545 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 32 0.34
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113... 29 1.8
07_03_0797 + 21575948-21576042,21576140-21576902,21577134-215773... 28 4.2
07_01_1119 + 10331275-10331330,10331343-10331462,10332023-10332164 28 4.2
03_05_1139 - 30689514-30689609,30689795-30689956,30691245-306912... 28 4.2
10_08_0359 - 17167829-17169595,17169976-17169996 28 5.6
02_05_0941 + 32953065-32953089,32954252-32954406,32954486-329545... 27 7.4
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 31.9 bits (69), Expect = 0.34
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -3
Query: 324 QPLRCPSQELLPSSSQRGC*NSLEDKRLRLDLVLNISLRIC--LHSFSAVSLS 172
+P+R PS+ + P Q GC + + LVL +SL +C +H+F + L+
Sbjct: 377 RPIRSPSRSISPRRDQEGC----SEVAVLEALVLRVSLGLCAMVHAFPTIKLA 425
>06_03_0097 -
16607936-16608712,16610114-16610320,16611220-16611336,
16611409-16611690,16611811-16612294,16612791-16612929,
16613138-16613243,16613396-16613562,16613632-16613707,
16614173-16614321,16614813-16614874,16615232-16615335,
16616856-16616950,16617046-16617136,16617785-16617922
Length = 997
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 372 DGYRATFKDIHASGASNMTITNVRSDLETHQFQLTLYGPHISARARYRSS 521
DG +F+++HASG + + + + + DL F + P R R + S
Sbjct: 197 DGATESFEELHASGNTPVYVLHPKQDLHGLGFDPFKHAPEFKDRKRLQKS 246
>07_03_0797 +
21575948-21576042,21576140-21576902,21577134-21577327,
21577667-21577700,21578421-21578485,21579032-21579524
Length = 547
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +2
Query: 422 HDHH*RQVGPRDPSVPADAVRTSHQRPRSVPLLRSSAAGQS 544
HD H V P+ ADA + +RPR RS+A GQS
Sbjct: 303 HDVHQNVVAPKAGVAGADAEGRAVERPRLNLKPRSNAVGQS 343
>07_01_1119 + 10331275-10331330,10331343-10331462,10332023-10332164
Length = 105
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 365 WSRRLQSNLQRHPCVRSIEHDHH*RQVGPRDPSVPADAVRTSHQRPRSVPLLRSS 529
+S R + +L+R + SI+ + + V RDP P+ A + + PLL+ +
Sbjct: 49 FSSRTKGSLKRRTALHSIKKKKYEKTVQQRDPKDPSRATKKKNNILALPPLLKDN 103
>03_05_1139 -
30689514-30689609,30689795-30689956,30691245-30691299,
30691695-30691959,30692749-30692959,30693542-30693721,
30693802-30693899,30694211-30694277,30694897-30694963,
30695335-30695447,30695988-30696032,30696116-30696223,
30696582-30696791,30697464-30697670,30697786-30697875,
30698168-30698389
Length = 731
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 360 GAGPDGYRATFKDIHASGASNMTITNVRSDLETHQFQLTLYG 485
GAG T A+ S+ + N R D+ T+ +QL YG
Sbjct: 139 GAGRGRGSKTVDQTRATSTSSAVVANGRHDILTNMYQLNPYG 180
>10_08_0359 - 17167829-17169595,17169976-17169996
Length = 595
Score = 27.9 bits (59), Expect = 5.6
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Frame = -1
Query: 518 GAVPSAGADVRSVQRQLELMGL*VRPDVSDGH--VRCS*RMDVFEGCSVTVGT---SS*G 354
G V + ++ R L GL VRP SD H VRC + V GC V +S G
Sbjct: 51 GVVETRALTDTTLLRSLAAKGLAVRPGASDEHHTVRCD-AVIVGSGCGGGVAAAVLASAG 109
Query: 353 YRQFVYHNG 327
Y+ V G
Sbjct: 110 YKVVVVEKG 118
>02_05_0941 +
32953065-32953089,32954252-32954406,32954486-32954587,
32955089-32955140,32955237-32955349,32955542-32955610,
32955942-32956049,32956517-32956661,32957245-32957476,
32957567-32957853,32957951-32958087,32958520-32958667,
32959464-32959595,32960239-32960367,32960707-32960834,
32960911-32961075,32961462-32961587,32962088-32962161,
32962285-32962534,32962875-32963054,32963128-32963361,
32964771-32964840,32965065-32965177,32965403-32965511,
32965639-32965688,32965823-32965889,32966131-32966203,
32966393-32966448,32966729-32966831,32967377-32967458,
32967717-32967779,32967918-32967977,32968356-32968448,
32968561-32968623,32968699-32968797
Length = 1363
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 204 IFGGKCSRQDPNVDACLLRSFNNLVDY 284
I GGK S+Q+P A +LR + + VDY
Sbjct: 647 IVGGKNSKQEPGYGADVLRLWVSSVDY 673
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,693,651
Number of Sequences: 37544
Number of extensions: 296447
Number of successful extensions: 646
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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