Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0219
         (545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)            31   0.81 
SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_52549| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_16328| Best HMM Match : Pentaxin (HMM E-Value=4.5e-08)              29   1.9  
SB_29455| Best HMM Match : Pentaxin (HMM E-Value=0.01)                 29   3.3  
SB_23647| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_41555| Best HMM Match : CXC (HMM E-Value=3.9)                       28   5.7  
SB_7442| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-11)                  27   7.6  
SB_29210| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
          Length = 1058

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 21/81 (25%), Positives = 34/81 (41%)
 Frame = +3

Query: 162 FLIATVIPLKTNANIFGGKCSRQDPNVDACLLRSFNNLVDYLKGGAPEMGIEEAEPIVID 341
           F I  +     + N FG K S++       L+ + N LV  L    P + +   E +++D
Sbjct: 234 FRIHVLTKANASTNTFGAKSSKRFD----ILVTTPNRLVHLLTQEPPGIELHNVEWLILD 289

Query: 342 ELSIALGAGPDGYRATFKDIH 404
           E       G DG+R     I+
Sbjct: 290 EADKLFEEGKDGFREQIATIY 310


>SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 437 RQVGPRDPSVPADAVRTSHQRPRSVPLLRSSAAGQ 541
           R+V    PSVP+    T H +PR V L+     GQ
Sbjct: 421 RRVPLTSPSVPSGTTSTDHSQPRRVQLVTMPVPGQ 455


>SB_52549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 294 GAPEMGIEEAEPIVIDELSIALGAGPDGYRATFKDIHASGASNMTITNV 440
           G   + +E++    + + SI LGA  DGY++ FK+       NMT  N+
Sbjct: 251 GEKALSMEDSLQCPLHDGSIVLGADQDGYQSKFKE---PFLGNMTAVNI 296


>SB_16328| Best HMM Match : Pentaxin (HMM E-Value=4.5e-08)
          Length = 253

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 294 GAPEMGIEEAEPIVIDELSIALGAGPDGYRATFKDIHASGASNMTITNV 440
           G   + +E++    + + SI LGA  DGY++ FK+       NMT  N+
Sbjct: 124 GEKALSMEDSLQCPLHDGSIVLGADQDGYQSKFKE---PFLGNMTAVNI 169


>SB_29455| Best HMM Match : Pentaxin (HMM E-Value=0.01)
          Length = 147

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 294 GAPEMGIEEAEPIVIDELSIALGAGPDGYRATFKDIHASGASNMTITNV 440
           G   + +E++    + + SI LGA  DGY++ FK+       NMT  N+
Sbjct: 47  GEKALSMEDSLQRPLHDGSIVLGADQDGYQSKFKE---PFLGNMTAVNI 92


>SB_23647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 335 DRRTVYSPRSWSRRLQSNLQRHPCVRSIEHDHH*RQVGPRDPSVPADA 478
           D  T Y   + ++RL++ +Q  P    +  +H     GPR P++P DA
Sbjct: 22  DALTTYIITNANKRLETKVQILPLTYGLPDEHD----GPRIPTIPGDA 65


>SB_41555| Best HMM Match : CXC (HMM E-Value=3.9)
          Length = 607

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -3

Query: 402 GCL*RLL-CNRRDQLLGL*TVRLSQWAQPLRCPSQELLPSSSQRGC*NSLEDKRL 241
           GC  RL  C    +   L   + +Q A+PL C ++++    S+RGC +S   +R+
Sbjct: 534 GCNTRLTTCRPGGKATRLRARKCTQMARPLPCRAKKVTTPPSKRGCRHSRWPRRI 588


>SB_7442| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-11)
          Length = 350

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -2

Query: 214 PPNMFAFVFSGITVAIKNNATNL-CILIFLTD*NLKTKRARNVFSSFLIPD*ASVAFSL 41
           PP     V S I V++   A NL C+++FL    ++ KRA  +  S  I D A V  SL
Sbjct: 34  PPYFPHQVISYIAVSVLIIAGNLLCLVVFLRTPQMRRKRAYYLLVSLSIAD-ALVGISL 91


>SB_29210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 369 PDGYRATFKDIHASGASNMTITNVRSDLETHQFQLTLYGPHISA 500
           P+    TF+  H+  AS  T   +RS+ + +     +Y PH+ A
Sbjct: 178 PEDSPRTFR--HSRNASRATSAGIRSECDFYGVATEIYKPHLEA 219


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,542,995
Number of Sequences: 59808
Number of extensions: 325057
Number of successful extensions: 793
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)