Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0219
         (545 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38920.1 68418.m04707 hypothetical protein                          27   6.2  
At4g00060.1 68417.m00006 nucleotidyltransferase family protein c...    27   8.2  

>At5g38920.1 68418.m04707 hypothetical protein
          Length = 192

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 475 VSWN*WVSRSDLTLVMVMFDAPDAWMSLKVA 383
           + W  W +R+DL      FDAPD  + ++ A
Sbjct: 24  ILWRLWKNRNDLVFKGKQFDAPDMELGMQNA 54


>At4g00060.1 68417.m00006 nucleotidyltransferase family protein
           contains Pfam profile: PF01909 nucleotidyltransferase
           domain
          Length = 839

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 158 RHEFMHSYFFNRLKFENKKGAQCFLLFFNSRLSVR-CVQP 42
           RH  M  +F + + +E  +GA+  L + N  L+VR  +QP
Sbjct: 379 RHWGMRGWFHDGVNWEEPRGAEIVLPWRNKSLAVRPIIQP 418


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,510,940
Number of Sequences: 28952
Number of extensions: 231433
Number of successful extensions: 571
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)