Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0218
         (595 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00004985C1 Cluster: hypothetical protein 86.t00009; ...    33   6.7  
UniRef50_Q5FIZ3 Cluster: PrtP; n=2; Lactobacillus|Rep: PrtP - La...    33   6.7  

>UniRef50_UPI00004985C1 Cluster: hypothetical protein 86.t00009;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 86.t00009 - Entamoeba histolytica HM-1:IMSS
          Length = 219

 Score = 32.7 bits (71), Expect = 6.7
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +2

Query: 110 LKPLFRNDRSKKL-IIESNKLIYEHLHKPNRI 202
           LKP+  +DR K+L +I+ NK++ EH  K N +
Sbjct: 17  LKPIENSDRRKRLYVIQLNKMLVEHFRKGNNL 48


>UniRef50_Q5FIZ3 Cluster: PrtP; n=2; Lactobacillus|Rep: PrtP -
            Lactobacillus acidophilus
          Length = 1627

 Score = 32.7 bits (71), Expect = 6.7
 Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = -1

Query: 595  VHKSQRLNLNKTKF-KIKTNLYLDLHGLKINIKISTMILIKFDY-YN 461
            ++  + +N+ K K+ K+  N+Y+ +   ++N K+  +ILIK  Y YN
Sbjct: 1527 LYNPKEVNIRKHKYYKVSKNVYIKVTSTRVNKKLKRLILIKNSYVYN 1573


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 483,744,044
Number of Sequences: 1657284
Number of extensions: 8136187
Number of successful extensions: 18561
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18545
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41488046300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)