Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0218
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar...    28   1.2  
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    26   4.8  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   6.3  

>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 155 ESNKLIYEHLHKPNRIYEQNEI 220
           E+ KL+YE+L K NR Y   ++
Sbjct: 16  EAEKLVYEYLRKTNRPYSATDV 37


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +2

Query: 92  WSRGD*LKPLFRNDRSKKLIIESNKLIYEHLHKPNRIYEQNEI 220
           WS  +  K + RN+    L ++   L +E   K   I  +N++
Sbjct: 72  WSFNNITKSVIRNEHGNNLTLQEELLRHEAYEKNEEIANENDV 114


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 100  WRLIKTFISKRSLQEINNRIQQAHLRTSTQTKSN 201
            W   K  I  + +  +NN +QQ H+ TS+  KS+
Sbjct: 1167 WNTPKLKIPSQQVT-VNNTLQQIHVHTSSDGKSS 1199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,131,958
Number of Sequences: 5004
Number of extensions: 38403
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)