Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0218
(595 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92970-4|CAB07479.1| 226|Caenorhabditis elegans Hypothetical pr... 29 1.9
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with... 29 3.3
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with... 29 3.3
U23450-8|AAK31471.1| 350|Caenorhabditis elegans Hypothetical pr... 29 3.3
EU052683-1|ABU48856.1| 249|Caenorhabditis elegans heparan sulfa... 29 3.3
EU052682-1|ABU48855.1| 278|Caenorhabditis elegans heparan sulfa... 29 3.3
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi... 29 3.3
AF098987-1|AAC67432.1| 276|Caenorhabditis elegans Heparan sulph... 29 3.3
Z95559-13|CAB09003.2| 682|Caenorhabditis elegans Hypothetical p... 27 7.6
AC006807-4|AAK84618.1| 904|Caenorhabditis elegans Hypothetical ... 27 7.6
>Z92970-4|CAB07479.1| 226|Caenorhabditis elegans Hypothetical
protein H06O01.4 protein.
Length = 226
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = -1
Query: 574 NLNKTKFKIKTNLYLDLHGLKINIKISTMILIKFDYYNRYTFKKI 440
NL+ + F + TN YL+L G IN + + + ++ N+YT + +
Sbjct: 63 NLHHSFFPLSTNHYLNLEGWLINTRAVDVDQLCKNWMNKYTVEVV 107
>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 1, isoform a
protein.
Length = 2322
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -1
Query: 298 SIRVTLFRNDLKSLLGNLEHYMRQSNNFVLLIDSI 194
++ +F + L+++L NL + NF LLID++
Sbjct: 178 NVYAAMFESTLRAILTNLPDFNSHEKNFELLIDTV 212
>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 1, isoform b
protein.
Length = 2019
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -1
Query: 298 SIRVTLFRNDLKSLLGNLEHYMRQSNNFVLLIDSI 194
++ +F + L+++L NL + NF LLID++
Sbjct: 178 NVYAAMFESTLRAILTNLPDFNSHEKNFELLIDTV 212
>U23450-8|AAK31471.1| 350|Caenorhabditis elegans Hypothetical
protein C30B5.7 protein.
Length = 350
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +3
Query: 471 SNLIRIIVDIFMLIFKPWRSRYKLVFILNL 560
S L+ ++ I L ++P+R+RY L+ +LN+
Sbjct: 47 STLVNTLLMIIFLGYRPFRTRYVLLILLNV 76
>EU052683-1|ABU48856.1| 249|Caenorhabditis elegans heparan sulfate
3-O sulfotransferaseisoform b protein.
Length = 249
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +2
Query: 38 MQFIYRLSH*F--NFSVESKWSRGD*LKPLFRNDRSKKLIIESNKLIYEHLHKPNRIYEQ 211
++ + R +H F N+++ W R P ND +++IE + + H P R+YE
Sbjct: 76 VRIVRRETHFFDSNYTLGFDWYRDQ--MPEVENDN--EIVIEKTPAYFTNEHVPKRVYEM 131
Query: 212 N 214
N
Sbjct: 132 N 132
>EU052682-1|ABU48855.1| 278|Caenorhabditis elegans heparan sulfate
3-O sulfotransferaseisoform a protein.
Length = 278
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +2
Query: 38 MQFIYRLSH*F--NFSVESKWSRGD*LKPLFRNDRSKKLIIESNKLIYEHLHKPNRIYEQ 211
++ + R +H F N+++ W R P ND +++IE + + H P R+YE
Sbjct: 76 VRIVRRETHFFDSNYTLGFDWYRDQ--MPEVENDN--EIVIEKTPAYFTNEHVPKRVYEM 131
Query: 212 N 214
N
Sbjct: 132 N 132
>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans
nonsense-mediated mRNA decay proteinSMG-1 protein.
Length = 2322
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -1
Query: 298 SIRVTLFRNDLKSLLGNLEHYMRQSNNFVLLIDSI 194
++ +F + L+++L NL + NF LLID++
Sbjct: 178 NVYAAMFESTLRAILTNLPDFNSHEKNFELLIDTV 212
>AF098987-1|AAC67432.1| 276|Caenorhabditis elegans Heparan
sulphotransferase protein 3 protein.
Length = 276
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +2
Query: 38 MQFIYRLSH*F--NFSVESKWSRGD*LKPLFRNDRSKKLIIESNKLIYEHLHKPNRIYEQ 211
++ + R +H F N+++ W R P ND +++IE + + H P R+YE
Sbjct: 76 VRIVRRETHFFDSNYTLGFDWYRDQ--MPEVENDN--EIVIEKTPAYFTNEHVPKRVYEM 131
Query: 212 N 214
N
Sbjct: 132 N 132
>Z95559-13|CAB09003.2| 682|Caenorhabditis elegans Hypothetical
protein Y41E3.1a protein.
Length = 682
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -2
Query: 132 SFRNKGFNQSPRLHFDSTL--KLNQCDKRYINCMLAIHVGRSW 10
++R KGF Q P H+ TL ++ + + R NC+ +I + R W
Sbjct: 320 TYRLKGFRQQPTDHYTRTLFEEVEKLNDR--NCIGSIPLHRMW 360
>AC006807-4|AAK84618.1| 904|Caenorhabditis elegans Hypothetical
protein Y58A7A.4 protein.
Length = 904
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -1
Query: 565 KTKFKIKT-NLYLDLHGLKINIKISTMILIKFDYYNRY 455
KT + +K N + G KINI TM + + YY Y
Sbjct: 705 KTFYSVKLPNKFASCPGCKININTETMNCVYYPYYYPY 742
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,424,419
Number of Sequences: 27780
Number of extensions: 201426
Number of successful extensions: 431
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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