Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0218
         (595 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25470.1 68416.m03166 bacterial hemolysin-related similar to ...    29   1.8  
At1g67150.1 68414.m07639 hypothetical protein contains Pfam prof...    27   7.1  

>At3g25470.1 68416.m03166 bacterial hemolysin-related similar to
           hemolysine GB:AAD36643 from [Thermotoga maritima],
           contains Pfam profile: PF01479 S4 domain
          Length = 301

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 165 LLDSIINFLER-SFRNKGFNQSPRLHFDSTLKLNQCDKR 52
           +L+ IIN +ER  F NKGF +SP    D  ++   C  R
Sbjct: 254 VLEKIINGVERYGFTNKGFIESPIKGADGNIEFLACFNR 292


>At1g67150.1 68414.m07639 hypothetical protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 408

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +2

Query: 74  FSVESKWSRGD*LKPLFRNDRSKKLIIESNKLIYEHLHKPNRIYEQNEI 220
           +S+   +  G  + P F  D S  +I+  N + YE  H P   +  N I
Sbjct: 250 YSLNVSFEEGCLILPSFPADESSNIILR-NVIAYEQCHDPENAFTTNYI 297


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,394,192
Number of Sequences: 28952
Number of extensions: 174253
Number of successful extensions: 352
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)