Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0215
(449 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 157 1e-39
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 157 1e-39
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 157 1e-39
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 93 1e-20
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 86 2e-18
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 49 3e-07
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 36 0.002
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 35 0.005
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 33 0.015
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 32 0.035
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 32 0.035
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 31 0.082
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 31 0.11
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.14
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 30 0.19
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 29 0.25
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 1.8
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 3.1
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 4.1
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 25 4.1
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 25 4.1
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 25 5.4
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 5.4
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 25 7.1
SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.1
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 24 9.4
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 157 bits (380), Expect = 1e-39
Identities = 71/78 (91%), Positives = 75/78 (96%)
Frame = +1
Query: 58 GQGKDHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 237
G+ K HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLD
Sbjct: 2 GKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLD 61
Query: 238 KLKAERERGITIDIALWE 291
KLKAERERGITIDIALW+
Sbjct: 62 KLKAERERGITIDIALWK 79
Score = 101 bits (243), Expect = 4e-23
Identities = 45/53 (84%), Positives = 49/53 (92%)
Frame = +2
Query: 290 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 448
KFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+G
Sbjct: 79 KFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDG 131
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 157 bits (380), Expect = 1e-39
Identities = 71/78 (91%), Positives = 75/78 (96%)
Frame = +1
Query: 58 GQGKDHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 237
G+ K HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLD
Sbjct: 2 GKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLD 61
Query: 238 KLKAERERGITIDIALWE 291
KLKAERERGITIDIALW+
Sbjct: 62 KLKAERERGITIDIALWK 79
Score = 102 bits (244), Expect = 3e-23
Identities = 46/53 (86%), Positives = 49/53 (92%)
Frame = +2
Query: 290 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 448
KFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+G
Sbjct: 79 KFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDG 131
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 157 bits (380), Expect = 1e-39
Identities = 71/78 (91%), Positives = 75/78 (96%)
Frame = +1
Query: 58 GQGKDHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 237
G+ K HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLD
Sbjct: 2 GKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLD 61
Query: 238 KLKAERERGITIDIALWE 291
KLKAERERGITIDIALW+
Sbjct: 62 KLKAERERGITIDIALWK 79
Score = 101 bits (243), Expect = 4e-23
Identities = 45/53 (84%), Positives = 49/53 (92%)
Frame = +2
Query: 290 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 448
KFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+G
Sbjct: 79 KFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDG 131
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 93.5 bits (222), Expect = 1e-20
Identities = 40/78 (51%), Positives = 58/78 (74%)
Frame = +1
Query: 46 LTKNGQGKDHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYA 225
L K+ GK+H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +
Sbjct: 229 LLKDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLS 288
Query: 226 WVLDKLKAERERGITIDI 279
W LD ERE+G T+++
Sbjct: 289 WALDSTSEEREKGKTVEV 306
Score = 63.3 bits (147), Expect = 2e-11
Identities = 26/52 (50%), Positives = 36/52 (69%)
Frame = +2
Query: 293 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 448
FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG + G
Sbjct: 311 FETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGG 362
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 86.2 bits (204), Expect = 2e-18
Identities = 37/81 (45%), Positives = 55/81 (67%)
Frame = +1
Query: 40 P*LTKNGQGKDHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFK 219
P + + K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF
Sbjct: 166 PEIFEQSNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFS 225
Query: 220 YAWVLDKLKAERERGITIDIA 282
YAW+LD + ER RG+T+D+A
Sbjct: 226 YAWLLDTTEEERARGVTMDVA 246
Score = 58.4 bits (135), Expect = 5e-10
Identities = 28/52 (53%), Positives = 32/52 (61%)
Frame = +2
Query: 293 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 448
FE+ K I DAPGHRDFI MI G S AD AVL+V + FE G +NG
Sbjct: 250 FESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENG 301
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 49.2 bits (112), Expect = 3e-07
Identities = 19/44 (43%), Positives = 31/44 (70%)
Frame = +2
Query: 290 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 421
++ET+ + +D PGH D+IKNMITG + D A+++V+A G+
Sbjct: 110 EYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQ 153
Score = 39.5 bits (88), Expect = 2e-04
Identities = 28/72 (38%), Positives = 35/72 (48%)
Frame = +1
Query: 67 KDHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 246
K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 51 KPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDKAP 95
Query: 247 AERERGITIDIA 282
E+ RGITI A
Sbjct: 96 EEKARGITISSA 107
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 36.3 bits (80), Expect = 0.002
Identities = 24/68 (35%), Positives = 36/68 (52%)
Frame = +1
Query: 79 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 258
NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 259 RGITIDIA 282
+GITI A
Sbjct: 111 KGITIQSA 118
Score = 32.3 bits (70), Expect = 0.035
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +2
Query: 293 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
FE S Y + IID PGH DF + D AVL++ A +G
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSG 181
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 35.1 bits (77), Expect = 0.005
Identities = 24/68 (35%), Positives = 35/68 (51%)
Frame = +1
Query: 79 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 258
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGD----TVMDYLPAERQ 76
Query: 259 RGITIDIA 282
RGITI+ A
Sbjct: 77 RGITINSA 84
Score = 27.9 bits (59), Expect = 0.76
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 314 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
+ +ID PGH DF + + D AV I+ G
Sbjct: 95 INLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.5 bits (73), Expect = 0.015
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 293 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 32.3 bits (70), Expect = 0.035
Identities = 25/65 (38%), Positives = 31/65 (47%)
Frame = +1
Query: 79 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 258
N+ VI HVD GKST T L+ K G I A + G F +D E+E
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQKAGII----------SAAKAGDARF-----MDTRADEQE 65
Query: 259 RGITI 273
RG+TI
Sbjct: 66 RGVTI 70
Score = 27.9 bits (59), Expect = 0.76
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 308 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 403
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 32.3 bits (70), Expect = 0.035
Identities = 25/65 (38%), Positives = 31/65 (47%)
Frame = +1
Query: 79 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 258
N+ VI HVD GKST T L+ K G I A + G F +D E+E
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQKAGII----------SAAKAGDARF-----MDTRADEQE 65
Query: 259 RGITI 273
RG+TI
Sbjct: 66 RGVTI 70
Score = 27.9 bits (59), Expect = 0.76
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 308 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 403
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 31.1 bits (67), Expect = 0.082
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 311 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 406
+V+ +D PGH + M+ G + D A+L++A
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 140
Score = 24.2 bits (50), Expect = 9.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1
Query: 76 INIVVIGHVDSGKST 120
INI IGHV GKST
Sbjct: 24 INIGTIGHVAHGKST 38
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 30.7 bits (66), Expect = 0.11
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 287 GKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 403
GK + + + IID PGH F GTS + A+L++
Sbjct: 542 GKLQYNIPGLLIIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.14
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 308 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 29.9 bits (64), Expect = 0.19
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +2
Query: 293 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
+ Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 119 YHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
Score = 29.1 bits (62), Expect = 0.33
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = +1
Query: 79 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 258
N VI H+D GKST + ++ G I++ + F LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103
Query: 259 RGITI 273
RGIT+
Sbjct: 104 RGITV 108
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 29.5 bits (63), Expect = 0.25
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 272 IVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIPPH 144
I IP+ A S+ N++ + +D LP + S V+L +P H
Sbjct: 171 IPIPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 1.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 323 IDAPGHRDFIKNMITGTSQADCAVLIV 403
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 3.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 262 HAHAQPLVCPIPKHI*RILYPFPGPPSRTSRWY 164
H+H PL P+P +L P P P S WY
Sbjct: 135 HSHHPPLHNPLPVSCQPVLRP-PPVPQVPSHWY 166
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 4.1
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -2
Query: 241 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 113
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 25.4 bits (53), Expect = 4.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 61 QGKDHINIVVIGHVDSGKSTTTGHLIYKC 147
Q +D+ IVV+G SGKST + +C
Sbjct: 108 QIQDNRVIVVVGETGSGKSTQIPQFLNEC 136
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 4.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 278 ISIVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMV 165
IS+ +P FSL+ ++ K LPI W S + S V
Sbjct: 409 ISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 5.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 196 PGPPSRTSRWYVCQYHHIC 140
P PP +T + Y QY+ +C
Sbjct: 8 PAPPKKTLQLYTPQYYGLC 26
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.0 bits (52), Expect = 5.4
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +1
Query: 67 KDHINIVVIGHVDSGKSTTTGHLIYKCG 150
+D+ ++V+G SGK+T +Y+ G
Sbjct: 506 RDNQVLIVVGETGSGKTTQLAQFLYEDG 533
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 24.6 bits (51), Expect = 7.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 314 VTIIDAPGHRDFIKN 358
+T+ID PG DFI N
Sbjct: 89 LTVIDTPGFGDFINN 103
>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 96
Score = 24.6 bits (51), Expect = 7.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 367 CDHVLDEISVSRSINDGNIVLASFEL 290
CDH+L IS SR G + FEL
Sbjct: 23 CDHLLQYISNSRDSKAGLKIFLVFEL 48
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 24.2 bits (50), Expect = 9.4
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 85 VVIGHVDSGKSTTTGHLIYKCG 150
+V+GH GK+T +Y+ G
Sbjct: 45 IVLGHTGCGKTTQIPQFLYEAG 66
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,773,768
Number of Sequences: 5004
Number of extensions: 33793
Number of successful extensions: 139
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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