Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0215
(449 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 91 4e-19
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 73 1e-13
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 69 2e-12
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 64 4e-11
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.012
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 31 0.33
SB_22693| Best HMM Match : DUF1042 (HMM E-Value=0.00027) 31 0.44
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) 31 0.44
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 1.0
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 30 1.0
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 29 2.3
SB_10748| Best HMM Match : GETHR (HMM E-Value=1.5) 29 2.3
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 28 3.1
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_5308| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 4.1
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 27 5.4
SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013) 27 5.4
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 27 5.4
SB_58692| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 27 5.4
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 27 7.2
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 27 9.5
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 91.1 bits (216), Expect = 4e-19
Identities = 41/45 (91%), Positives = 43/45 (95%)
Frame = +1
Query: 67 KDHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 201
K HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 5 KIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 72.9 bits (171), Expect = 1e-13
Identities = 31/53 (58%), Positives = 40/53 (75%)
Frame = +2
Query: 290 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 448
+F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG G
Sbjct: 7 RFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGG 59
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 68.5 bits (160), Expect = 2e-12
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +1
Query: 199 MGKGSFKYAWVLDKLKAERERGITIDIALWE 291
MGKGSFKYAWVLDKLKAERERGITIDIALW+
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWK 31
Score = 64.9 bits (151), Expect = 3e-11
Identities = 28/30 (93%), Positives = 29/30 (96%)
Frame = +2
Query: 290 KFETSKYYVTIIDAPGHRDFIKNMITGTSQ 379
KFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 31 KFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 64.5 bits (150), Expect = 4e-11
Identities = 25/52 (48%), Positives = 37/52 (71%)
Frame = +2
Query: 293 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 448
F+T + T++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + G
Sbjct: 217 FDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGG 268
Score = 50.4 bits (115), Expect = 7e-07
Identities = 19/47 (40%), Positives = 34/47 (72%)
Frame = +1
Query: 139 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI 279
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER++G T+++
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEV 212
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 36.3 bits (80), Expect = 0.012
Identities = 25/65 (38%), Positives = 31/65 (47%)
Frame = +1
Query: 79 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 258
N ++ HVD GKST L+ G I K + K VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986
Query: 259 RGITI 273
RGIT+
Sbjct: 1987 RGITV 1991
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.14
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 314 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
+T ID PGH F G + D VL+VAA G
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 31.5 bits (68), Expect = 0.33
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 79 NIVVIGHVDSGKSTTTGHLIYKCG 150
N+ VI HVD GKST T L+ K G
Sbjct: 20 NMSVIAHVDHGKSTLTDSLVSKAG 43
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 308 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_22693| Best HMM Match : DUF1042 (HMM E-Value=0.00027)
Length = 2261
Score = 31.1 bits (67), Expect = 0.44
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = -2
Query: 448 TVLRDTSFEFTGTGSYDEHSAISLRGSCDHVLDEISVSR---SINDGNIVLASFELPREQ 278
T+L D F IS RG CD ++D +++ S+ D + + ++ +E+
Sbjct: 1867 TILEDKDFIVDLFVETAPSGMISNRGFCDTIMDLANLTHGMESLPDAWMNITQTQVTQEE 1926
Query: 277 YRL*YHAHAQPL 242
L YH+HA L
Sbjct: 1927 LSLTYHSHASTL 1938
>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
Length = 2352
Score = 31.1 bits (67), Expect = 0.44
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +1
Query: 67 KDHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI 171
KD+ V+IG SGKST G +Y G DK I
Sbjct: 737 KDNQVTVLIGETGSGKSTQIGQYLYDAGLADKGQI 771
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 320 IIDAPGHRDFIKNMITGTSQADCAVLIV 403
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 29.9 bits (64), Expect = 1.0
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +2
Query: 314 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
+ I+D PGH+DF ++ + D ++++ G
Sbjct: 81 INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
Score = 28.3 bits (60), Expect = 3.1
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +1
Query: 88 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGI 267
+I H D+GK+T T L+ G I +EA + K D ++ ER+RGI
Sbjct: 15 IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65
Query: 268 TI 273
++
Sbjct: 66 SV 67
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -3
Query: 264 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 124
TT+T S YPS+ + +F D T N TT V +T+
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSITA 282
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -3
Query: 264 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 124
TT+T S YPS+ + +F D T N TT V +++
Sbjct: 437 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 483
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 273 DCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 124
D TT+T S YPS+ + +F D T N TT V +++
Sbjct: 344 DFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 393
Score = 27.9 bits (59), Expect = 4.1
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -3
Query: 264 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 124
TT+T S YPS+ + +F D T N TT V +++
Sbjct: 548 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVQSISA 594
>SB_10748| Best HMM Match : GETHR (HMM E-Value=1.5)
Length = 126
Score = 28.7 bits (61), Expect = 2.3
Identities = 21/71 (29%), Positives = 36/71 (50%)
Frame = +1
Query: 49 TKNGQGKDHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAW 228
TK+G+ KD G GK+ + +K ++K+ +EK E E QEM K +
Sbjct: 39 TKDGKTKD--GRTKDGKTKDGKTKRWKNKRWKNKSMEKQKMEKQEMEKQEMEKQKME-EQ 95
Query: 229 VLDKLKAERER 261
++K K E+++
Sbjct: 96 KMEKQKMEKQK 106
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 28.3 bits (60), Expect = 3.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 323 IDAPGHRDFIKNMITGTSQADCAVLIVA 406
+D PGH + M+ G + D A+L++A
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIA 96
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 27.9 bits (59), Expect = 4.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 76 INIVVIGHVDSGKSTTTGHLIY 141
I + V+G+V+SGKST G L Y
Sbjct: 113 IRMAVLGNVESGKSTLLGVLTY 134
>SB_5308| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 608
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 61 QGKDHINIVVIGHVDSGKSTTTGH 132
QGK ++N + GH + G++ T GH
Sbjct: 367 QGKGYLNQMYKGHSEEGENVTDGH 390
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -3
Query: 264 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 124
TT+T S YPS+ + +F D T N TT V +++
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 282
>SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013)
Length = 663
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 172 EKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWEVRN 300
+++ K +EM + K W +KLKAE E L +V N
Sbjct: 42 KEYSKLKEEMNSDAVKVKWAQNKLKAELEAHKETKTKLTQVTN 84
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 27.5 bits (58), Expect = 5.4
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +2
Query: 314 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 409
+ +D PGH F G D +++VAA
Sbjct: 140 IAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
>SB_58692| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 37
Score = 27.5 bits (58), Expect = 5.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 52 KNGQGKDHINIVVIGHV 102
+ G G +H+NI+ IGHV
Sbjct: 20 EEGNGLEHVNIIFIGHV 36
>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
Length = 572
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -3
Query: 264 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 124
TT+T S YPS+ + +F D T N TT V +++
Sbjct: 18 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 64
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -3
Query: 264 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 124
TT+T S YPS+ + +F D T N TT V +++
Sbjct: 420 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 466
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 27.1 bits (57), Expect = 7.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 76 INIVVIGHVDSGKSTTTGHLIY 141
+ + V+G+VD+GKST G L +
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTH 251
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 26.6 bits (56), Expect = 9.5
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +1
Query: 73 HINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYA 225
+ NI V+GHVDSGK++ L DK + ++G SF+ A
Sbjct: 35 NFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA 87
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,600,078
Number of Sequences: 59808
Number of extensions: 270203
Number of successful extensions: 661
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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