Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0215
(449 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 146 8e-36
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 146 8e-36
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 146 8e-36
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 146 8e-36
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 91 4e-19
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 73 7e-14
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 50 7e-07
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 50 7e-07
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 38 0.004
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 34 0.051
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 33 0.067
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 33 0.067
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 33 0.067
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 33 0.067
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 33 0.089
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 33 0.12
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 32 0.16
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 32 0.16
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 32 0.21
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 32 0.21
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 31 0.27
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 30 0.63
At1g76825.1 68414.m08940 eukaryotic translation initiation facto... 30 0.83
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 30 0.83
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 30 0.83
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 29 1.1
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 28 3.4
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 27 5.9
At5g37055.1 68418.m04446 zinc finger (HIT type) family protein c... 27 7.7
At5g27540.1 68418.m03297 GTP-binding protein-related low similar... 27 7.7
At5g13650.2 68418.m01585 elongation factor family protein contai... 27 7.7
At5g13650.1 68418.m01584 elongation factor family protein contai... 27 7.7
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 27 7.7
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 27 7.7
At3g10670.1 68416.m01283 ABC transporter family protein similar ... 27 7.7
At2g35340.1 68415.m04333 RNA helicase, putative similar to ATP-d... 27 7.7
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 146 bits (353), Expect = 8e-36
Identities = 69/86 (80%), Positives = 73/86 (84%)
Frame = +1
Query: 58 GQGKDHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 237
G+ K HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVLD
Sbjct: 2 GKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLD 61
Query: 238 KLKAERERGITIDIALWEVRN*QVLC 315
KLKAERERGITIDIALW+ + C
Sbjct: 62 KLKAERERGITIDIALWKFETTKYYC 87
Score = 98.3 bits (234), Expect = 2e-21
Identities = 44/53 (83%), Positives = 49/53 (92%)
Frame = +2
Query: 290 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 448
KFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+G
Sbjct: 79 KFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDG 131
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 146 bits (353), Expect = 8e-36
Identities = 69/86 (80%), Positives = 73/86 (84%)
Frame = +1
Query: 58 GQGKDHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 237
G+ K HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVLD
Sbjct: 2 GKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLD 61
Query: 238 KLKAERERGITIDIALWEVRN*QVLC 315
KLKAERERGITIDIALW+ + C
Sbjct: 62 KLKAERERGITIDIALWKFETTKYYC 87
Score = 98.3 bits (234), Expect = 2e-21
Identities = 44/53 (83%), Positives = 49/53 (92%)
Frame = +2
Query: 290 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 448
KFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+G
Sbjct: 79 KFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDG 131
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 146 bits (353), Expect = 8e-36
Identities = 69/86 (80%), Positives = 73/86 (84%)
Frame = +1
Query: 58 GQGKDHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 237
G+ K HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVLD
Sbjct: 2 GKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLD 61
Query: 238 KLKAERERGITIDIALWEVRN*QVLC 315
KLKAERERGITIDIALW+ + C
Sbjct: 62 KLKAERERGITIDIALWKFETTKYYC 87
Score = 98.3 bits (234), Expect = 2e-21
Identities = 44/53 (83%), Positives = 49/53 (92%)
Frame = +2
Query: 290 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 448
KFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+G
Sbjct: 79 KFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDG 131
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 146 bits (353), Expect = 8e-36
Identities = 69/86 (80%), Positives = 73/86 (84%)
Frame = +1
Query: 58 GQGKDHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 237
G+ K HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVLD
Sbjct: 2 GKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLD 61
Query: 238 KLKAERERGITIDIALWEVRN*QVLC 315
KLKAERERGITIDIALW+ + C
Sbjct: 62 KLKAERERGITIDIALWKFETTKYYC 87
Score = 98.3 bits (234), Expect = 2e-21
Identities = 44/53 (83%), Positives = 49/53 (92%)
Frame = +2
Query: 290 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 448
KFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+G
Sbjct: 79 KFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDG 131
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 90.6 bits (215), Expect = 4e-19
Identities = 39/80 (48%), Positives = 55/80 (68%)
Frame = +1
Query: 46 LTKNGQGKDHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYA 225
L K +N+ ++GHVDSGKST +G L++ G I ++ + K+EKEA+ GKGSF YA
Sbjct: 230 LDKESDALSQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKGSFAYA 289
Query: 226 WVLDKLKAERERGITIDIAL 285
W LD+ ERERGIT+ +A+
Sbjct: 290 WALDESAEERERGITMTVAV 309
Score = 63.3 bits (147), Expect = 7e-11
Identities = 23/47 (48%), Positives = 36/47 (76%)
Frame = +2
Query: 293 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 433
F + +++V ++D+PGH+DF+ NMI G +QAD A+L++ A G FEAG
Sbjct: 312 FNSKRHHVVLLDSPGHKDFVPNMIAGATQADAAILVIDASVGAFEAG 358
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 73.3 bits (172), Expect = 7e-14
Identities = 30/71 (42%), Positives = 51/71 (71%)
Frame = +1
Query: 67 KDHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 246
K H+N+V IGHVD+GKST G +++ G +D R I+K+EKEA++ + S+ A+++D +
Sbjct: 99 KRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYMAYIMDTNE 158
Query: 247 AERERGITIDI 279
ER +G T+++
Sbjct: 159 EERLKGKTVEV 169
Score = 64.9 bits (151), Expect = 2e-11
Identities = 27/52 (51%), Positives = 36/52 (69%)
Frame = +2
Query: 293 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 448
FET TI+DAPGH+ ++ NMI+G SQAD VL+++A GEFE G + G
Sbjct: 174 FETESTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGG 225
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 50.0 bits (114), Expect = 7e-07
Identities = 19/43 (44%), Positives = 29/43 (67%)
Frame = +2
Query: 290 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
++ET + +D PGH D++KNMITG +Q D A+L+V+ G
Sbjct: 136 EYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG 178
Score = 37.9 bits (84), Expect = 0.003
Identities = 26/75 (34%), Positives = 34/75 (45%)
Frame = +1
Query: 67 KDHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 246
K H+NI IGHVD GK+T T L I +K+++ +D
Sbjct: 77 KPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE---------------IDAAP 121
Query: 247 AERERGITIDIALWE 291
ER RGITI+ A E
Sbjct: 122 EERARGITINTATVE 136
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 50.0 bits (114), Expect = 7e-07
Identities = 19/43 (44%), Positives = 30/43 (69%)
Frame = +2
Query: 290 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
++ET+K + +D PGH D++KNMITG +Q D +L+V+ G
Sbjct: 124 EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGPDG 166
Score = 33.5 bits (73), Expect = 0.067
Identities = 25/74 (33%), Positives = 33/74 (44%)
Frame = +1
Query: 61 QGKDHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 240
+ K H+N+ IGHVD GK+T T + K E GK +DK
Sbjct: 63 RNKPHVNVGTIGHVDHGKTTLTAAI---------------TKVLAEEGKAKAIAFDEIDK 107
Query: 241 LKAERERGITIDIA 282
E++RGITI A
Sbjct: 108 APEEKKRGITIATA 121
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 37.5 bits (83), Expect = 0.004
Identities = 24/72 (33%), Positives = 39/72 (54%)
Frame = +1
Query: 67 KDHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 246
KD+ NI ++ H+D+GK+TTT ++Y G + E+ +G+ W ++
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTGR---------NYKIGEVHEGTATMDW----ME 140
Query: 247 AERERGITIDIA 282
E+ERGITI A
Sbjct: 141 QEQERGITITSA 152
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 33.9 bits (74), Expect = 0.051
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 61 QGKDHINIVVIGHVDSGKSTTTGHLIYKCGG 153
+G+ NI ++ HVD GK+T HLI GG
Sbjct: 5 EGRKVRNICILAHVDHGKTTLADHLIASSGG 35
Score = 32.7 bits (71), Expect = 0.12
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 308 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
Y + +ID+PGH DF + T +D A+++V A G
Sbjct: 74 YSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG 110
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 33.5 bits (73), Expect = 0.067
Identities = 24/68 (35%), Positives = 36/68 (52%)
Frame = +1
Query: 79 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 258
NI + H+DSGK+T T +++ G R E E ++ G G+ +D + ERE
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTG----RIHEIHEVRGRD-GVGA-----KMDSMDLERE 116
Query: 259 RGITIDIA 282
+GITI A
Sbjct: 117 KGITIQSA 124
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 308 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
Y V IID PGH DF + D A+L++ + G
Sbjct: 133 YKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGG 169
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 33.5 bits (73), Expect = 0.067
Identities = 24/68 (35%), Positives = 36/68 (52%)
Frame = +1
Query: 79 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 258
NI + H+DSGK+T T +++ G R E E ++ G G+ +D + ERE
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTG----RIHEIHEVRGRD-GVGA-----KMDSMDLERE 116
Query: 259 RGITIDIA 282
+GITI A
Sbjct: 117 KGITIQSA 124
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 308 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
Y V IID PGH DF + D A+L++ + G
Sbjct: 133 YKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGG 169
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 33.5 bits (73), Expect = 0.067
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +2
Query: 299 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
+ Y I+D PGH +F M AD AVLIV A G
Sbjct: 206 SKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 33.5 bits (73), Expect = 0.067
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +2
Query: 299 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
+ Y I+D PGH +F M AD AVLIV A G
Sbjct: 206 SKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 33.1 bits (72), Expect = 0.089
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 296 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
E S Y + +ID PGH DF + S A+L+V A G
Sbjct: 131 EASGYLLNLIDTPGHVDFSYEVSRSLSACQGALLVVDAAQG 171
Score = 29.5 bits (63), Expect = 1.1
Identities = 25/65 (38%), Positives = 31/65 (47%)
Frame = +1
Query: 79 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 258
N +I H+D GKST L+ G I K G G +Y LDKL +RE
Sbjct: 68 NFSIIAHIDHGKSTLADRLMELTGTIKK-------------GHGQPQY---LDKL--QRE 109
Query: 259 RGITI 273
RGIT+
Sbjct: 110 RGITV 114
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 32.7 bits (71), Expect = 0.12
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 314 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
+T +D PGH F + G + D VL+VAA G
Sbjct: 270 ITFLDTPGHAAFSEMRARGAAVTDIVVLVVAADDG 304
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 32.3 bits (70), Expect = 0.16
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 299 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 409
T + +V+ +D PGH + M+ G + D A+L++AA
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAA 160
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 32.3 bits (70), Expect = 0.16
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 299 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 409
T + +V+ +D PGH + M+ G + D A+L++AA
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAA 160
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 31.9 bits (69), Expect = 0.21
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 311 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 409
+V+ +D PGH + M+ G + D A+LI+AA
Sbjct: 120 HVSFVDCPGHDILMATMLNGAAIMDGALLIIAA 152
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 31.9 bits (69), Expect = 0.21
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +2
Query: 293 FETSKY----YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 409
FE SK +V+ +D PGH + M+ G + D A+L++AA
Sbjct: 112 FENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAA 154
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 31.5 bits (68), Expect = 0.27
Identities = 24/73 (32%), Positives = 32/73 (43%)
Frame = +1
Query: 79 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 258
N +I H+D GKST L+ G + R + K F LD + ERE
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNRDM-----------KEQF-----LDNMDLERE 131
Query: 259 RGITIDIALWEVR 297
RGITI + +R
Sbjct: 132 RGITIKLQAARMR 144
Score = 30.7 bits (66), Expect = 0.48
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 293 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
+E + + + +ID PGH DF + + + A+L+V A G
Sbjct: 147 YEDTPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG 188
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 30.3 bits (65), Expect = 0.63
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 287 GKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 403
G + ++Y + +ID+PGH DF + D A+++V
Sbjct: 91 GARDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVV 129
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 79 NIVVIGHVDSGKSTTTGHLIYKCG 150
N+ VI HVD GKST T L+ G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAG 44
>At1g76825.1 68414.m08940 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profile PF00009: Elongation
factor Tu GTP binding domain
Length = 630
Score = 29.9 bits (64), Expect = 0.83
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 320 IIDAPGHRDFIKNMITGTSQADCAVLIV 403
+ID PGH F G+S D A+L+V
Sbjct: 113 VIDTPGHESFTNLRSRGSSLCDLAILVV 140
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 29.9 bits (64), Expect = 0.83
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 320 IIDAPGHRDFIKNMITGTSQADCAVLIV 403
+ID PGH F G+S D A+L+V
Sbjct: 772 VIDTPGHESFTNLRSRGSSLCDLAILVV 799
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 29.9 bits (64), Expect = 0.83
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 320 IIDAPGHRDFIKNMITGTSQADCAVLIV 403
+ID PGH F G+S D A+L+V
Sbjct: 705 VIDTPGHESFTNLRSRGSSLCDLAILVV 732
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 29.5 bits (63), Expect = 1.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 314 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 403
+ +ID PGH F G++ D A+L+V
Sbjct: 558 ILVIDTPGHESFTNLRSRGSNLCDLAILVV 587
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 323 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
+D PGH F G D A+++VAA G
Sbjct: 557 LDTPGHEAFGAMRARGARVTDIAIIVVAADDG 588
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = -2
Query: 406 SYDEHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPR 284
++D+HS +L+ D + D + ++ N+VL F P+
Sbjct: 52 AFDQHSRAALQAGIDKLADCVGLTLGPRGRNVVLDEFGSPK 92
>At5g37055.1 68418.m04446 zinc finger (HIT type) family protein
contains Pfam profile: PF04438 HIT zinc finger
Length = 171
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 232 IPKHI*RILYPFPGPPSRTSRWYVC 158
+P H+ L GPPS +SR Y C
Sbjct: 110 LPSHVPTYLKAAVGPPSSSSRRYFC 134
>At5g27540.1 68418.m03297 GTP-binding protein-related low similarity
to Mig-2-like GTPase Mtl [Drosophila melanogaster]
GI:7271872; contains Pfam profile PF00036: EF hand
Length = 648
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +2
Query: 302 SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 436
++Y +D PG ++ ++ G + LIVAA T F +
Sbjct: 2 ARYAAGAVDCPGSPKSVRIVVVGDKGTGKSSLIVAAATDSFPPNV 46
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 26.6 bits (56), Expect = 7.7
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +1
Query: 67 KDHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 243
+D++ NI ++ HVD GK+T ++ + K ++ Q M + ++D
Sbjct: 80 RDNVRNIAIVAHVDHGKTTLVDSMLRQA---------KVFRDNQVMQER------IMDSN 124
Query: 244 KAERERGITI 273
ERERGITI
Sbjct: 125 DLERERGITI 134
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 26.6 bits (56), Expect = 7.7
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +1
Query: 67 KDHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 243
+D++ NI ++ HVD GK+T ++ + K ++ Q M + ++D
Sbjct: 79 RDNVRNIAIVAHVDHGKTTLVDSMLRQA---------KVFRDNQVMQER------IMDSN 123
Query: 244 KAERERGITI 273
ERERGITI
Sbjct: 124 DLERERGITI 133
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 79 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 201
N+V+IG +D+ + H+I + + + +K E+EA E+
Sbjct: 75 NVVLIGELDTEREELPPHMI-RVSEAEIKRAQKVEREASEL 114
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 79 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 201
N+V+IG +D+ + H+I + + + +K E+EA E+
Sbjct: 75 NVVLIGELDTEREELPPHMI-RVSEAEIKRAQKVEREASEL 114
>At3g10670.1 68416.m01283 ABC transporter family protein similar to
ABC transporter ATPase GB:AAC68280 [Chlamydia
trachomatis]
Length = 338
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 52 KNGQGKDHINIVVIGHVDSGKSTTTGHLIYK 144
KNG GK + V++GH D T G +++K
Sbjct: 127 KNGSGKSTFSKVLVGHPD--YEVTGGSIVFK 155
>At2g35340.1 68415.m04333 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1110
Score = 26.6 bits (56), Expect = 7.7
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +1
Query: 67 KDHINIVVIGHVDSGKSTTTGHLIYKCG 150
KDH ++++G SGK+T +++ G
Sbjct: 484 KDHQVLIIVGETGSGKTTQIPQYLHEAG 511
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,531,566
Number of Sequences: 28952
Number of extensions: 186302
Number of successful extensions: 543
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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